View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10769_9 (Length: 376)
Name: NF10769_9
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10769_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35229809 - 35229564
Alignment:
| Q |
1 |
tatatttgtttttctgaattttctatctcatttatcttgcgtgttcattaattattattattcttgcagtggatcttctgggtgggaccatttattggag |
100 |
Q |
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| T |
35229809 |
tatatttgtttttctgaattttctatctcatttgtcttgtgtgttcattaattattattattcttgcagtggatcttctgggtgggaccatttattggag |
35229710 |
T |
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| Q |
101 |
cagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtctaagtaatcgaatcaaacggttcgtgatcaatcaagacatgtttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35229709 |
cagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtctaagtaatcgaatcaaacggttcgtgatcaatcaagacatgtttg |
35229610 |
T |
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| Q |
201 |
tgggcttcatctcactcgactcatccttttctttttccttgttttcttc |
249 |
Q |
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| T |
35229609 |
tgggcttcatttca-tc--atcatccttttctttttccttgttttcttc |
35229564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 35229481 - 35229442
Alignment:
| Q |
337 |
tgagtaatggcctaattttcctatggttttgagttggaaa |
376 |
Q |
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| T |
35229481 |
tgagtaatggcctaattttcctatggttttgagttggaaa |
35229442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 31459392 - 31459302
Alignment:
| Q |
65 |
tgcagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtc |
155 |
Q |
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| T |
31459392 |
tgcagtggattttctgggttggaccattcattggtgcagcacttgcagctctttaccacacagttgtgatcagagccattcctttcaagtc |
31459302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 41038053 - 41038099
Alignment:
| Q |
64 |
ttgcagtggatcttctgggtgggaccatttattggagcagctcttgc |
110 |
Q |
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| T |
41038053 |
ttgcagtggatattctgggttggaccatttattggagctgctcttgc |
41038099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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