View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10769_low_1 (Length: 259)

Name: NF10769_low_1
Description: NF10769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10769_low_1
NF10769_low_1
[»] chr2 (3 HSPs)
chr2 (94-242)||(2081321-2081475)
chr2 (118-177)||(3356618-3356676)
chr2 (100-145)||(42529185-42529233)
[»] chr4 (2 HSPs)
chr4 (117-177)||(52630119-52630179)
chr4 (94-164)||(2200564-2200643)
[»] chr3 (2 HSPs)
chr3 (110-197)||(24310385-24310477)
chr3 (107-177)||(11640996-11641066)
[»] chr1 (4 HSPs)
chr1 (133-177)||(36421358-36421402)
chr1 (119-177)||(42311160-42311218)
chr1 (116-176)||(6227166-6227226)
chr1 (141-177)||(49879944-49879980)
[»] chr7 (1 HSPs)
chr7 (147-177)||(24658900-24658930)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 2081475 - 2081321
Alignment:
Q  94 aaagtgaaagtgagtgtgctgctg------tgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacataccaatataga 187  Q
    ||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  2081475 aaagtgaaagtgagtgtgctgctgctactgtgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagctccacataccaatatagg 2081376  T
Q  188 tccgcctctgattattattataaaagtattaaaacatatgaaagcagtttgattt 242  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2081375 tacgcctctgattattactataaaagtattaaaacatatgaaagcagtttgattt 2081321  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 3356676 - 3356618
Alignment:
Q  118 tgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacata 177  Q
    |||| |||||||||| ||| |||||||||| ||| |||||||| ||||||||||||||||    
T  3356676 tgttatatctattattaaa-aaaaaataggaaaatgcatgtggggctttagccccacata 3356618  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 42529185 - 42529233
Alignment:
Q  100 aaagtgagtgtgctgct---gtgttttatctattataaaataaaaaata 145  Q
    |||||||||||| ||||   |||||||||||||||||||||||||||||    
T  42529185 aaagtgagtgtgttgctattgtgttttatctattataaaataaaaaata 42529233  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 52630119 - 52630179
Alignment:
Q  117 gtgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacata 177  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||    
T  52630119 gtgttttatctattaaaaaaaaaaaaatagggaaaagcatgtggagctatagtcccacata 52630179  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 2200643 - 2200564
Alignment:
Q  94 aaagtgaaagtgagtgtg---ctgctgtgttttatctattat-aaaata-----aaaaatagggaaaagcatgtggagct 164  Q
    |||| |||||||||||||   ||||||||||||||||||||| ||||||     ||||||||||||||||||| ||||||    
T  2200643 aaagagaaagtgagtgtgtcgctgctgtgttttatctattataaaaataaaaataaaaatagggaaaagcatgcggagct 2200564  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 24310385 - 24310477
Alignment:
Q  110 tgctgctgtgttttatctattataaa---ataaaaaatagggaaaagcatgtggagctttagccccacata---ccaatatagatccgcctctg 197  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||||||||||||| |||| |||||||   ||||||| | ||||||||||    
T  24310385 tgctgctgtgttttatctattataaacaaataaaaaa-agggaaaagcatgtggagctatagctccacatagacccaatatgggtccgcctctg 24310477  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 11640996 - 11641066
Alignment:
Q  107 gtgtgctgctgtgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacata 177  Q
    |||||||  |||||||| |||| | | ||| ||||| ||||||||||||||||||||| ||| ||||||||    
T  11640996 gtgtgctaatgtgttttgtctacttttaaaaaaaaattagggaaaagcatgtggagctatagtcccacata 11641066  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 36421358 - 36421402
Alignment:
Q  133 aaaataaaaaatagggaaaagcatgtggagctttagccccacata 177  Q
    |||| |||||| | |||||||||||||||||||||||||||||||    
T  36421358 aaaaaaaaaaaaaaggaaaagcatgtggagctttagccccacata 36421402  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 42311218 - 42311160
Alignment:
Q  119 gttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacata 177  Q
    |||||||| ||||||| | |||||| ||| |||| |||||||||||||||| |||||||    
T  42311218 gttttatcaattataacaaaaaaaaaaggaaaaaacatgtggagctttagctccacata 42311160  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 6227166 - 6227226
Alignment:
Q  116 tgtgttttatctattataaaataaaaaatagggaaaagcatgtggagctttagccccacat 176  Q
    |||||||||||||||  || | |||||| ||  ||||||||||||||||||||| ||||||    
T  6227166 tgtgttttatctattggaagaaaaaaaaaagtaaaaagcatgtggagctttagctccacat 6227226  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 49879980 - 49879944
Alignment:
Q  141 aaatagggaaaagcatgtggagctttagccccacata 177  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  49879980 aaatagggaagagcatgtggggctttagccccacata 49879944  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 177
Target Start/End: Original strand, 24658900 - 24658930
Alignment:
Q  147 ggaaaagcatgtggagctttagccccacata 177  Q
    |||||||||||||||||||||||||||||||    
T  24658900 ggaaaagcatgtggagctttagccccacata 24658930  T

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