View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1076_high_1 (Length: 746)

Name: NF1076_high_1
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1076_high_1
NF1076_high_1
[»] chr7 (39 HSPs)
chr7 (384-746)||(17504041-17504405)
chr7 (384-746)||(17548809-17549173)
chr7 (9-200)||(17506963-17507154)
chr7 (9-200)||(17546060-17546251)
chr7 (196-382)||(17504433-17504619)
chr7 (196-382)||(17548595-17548781)
chr7 (28-286)||(15645127-15645385)
chr7 (611-746)||(17056052-17056187)
chr7 (587-746)||(27218604-27218763)
chr7 (614-735)||(19544895-19545016)
chr7 (611-738)||(22819207-22819334)
chr7 (610-699)||(45165088-45165177)
chr7 (587-690)||(4937666-4937769)
chr7 (610-746)||(6335886-6336022)
chr7 (627-699)||(25018847-25018919)
chr7 (614-701)||(34104003-34104090)
chr7 (627-690)||(39931134-39931197)
chr7 (587-690)||(234976-235079)
chr7 (587-690)||(17721134-17721237)
chr7 (587-746)||(31423101-31423260)
chr7 (651-723)||(8752901-8752973)
chr7 (244-347)||(551464-551567)
chr7 (294-349)||(45165468-45165523)
chr7 (587-690)||(47877482-47877584)
chr7 (325-375)||(29557447-29557497)
chr7 (619-661)||(33795924-33795966)
chr7 (307-349)||(39694660-39694702)
chr7 (319-378)||(6343520-6343579)
chr7 (587-699)||(20349463-20349574)
chr7 (651-723)||(23054476-23054548)
chr7 (137-212)||(551599-551674)
chr7 (587-690)||(11276786-11276889)
chr7 (618-701)||(11341326-11341409)
chr7 (658-701)||(41805285-41805328)
chr7 (619-661)||(18767939-18767981)
chr7 (619-661)||(34457725-34457767)
chr7 (617-722)||(15124338-15124443)
chr7 (610-675)||(20918482-20918547)
chr7 (28-97)||(45976574-45976643)
[»] chr8 (31 HSPs)
chr8 (9-382)||(25890957-25891330)
chr8 (587-691)||(42649718-42649822)
chr8 (627-735)||(36492920-36493028)
chr8 (587-746)||(20824798-20824957)
chr8 (610-664)||(4310406-4310460)
chr8 (633-735)||(36025066-36025168)
chr8 (9-61)||(18309115-18309167)
chr8 (592-735)||(29721403-29721546)
chr8 (592-690)||(7924890-7924988)
chr8 (628-738)||(37165611-37165721)
chr8 (651-735)||(12332411-12332495)
chr8 (610-746)||(18187668-18187804)
chr8 (587-699)||(25193587-25193699)
chr8 (587-690)||(172577-172680)
chr8 (587-690)||(8300302-8300405)
chr8 (587-735)||(13878980-13879128)
chr8 (587-690)||(9923100-9923203)
chr8 (611-746)||(17659354-17659489)
chr8 (628-738)||(12341107-12341217)
chr8 (613-675)||(38046883-38046945)
chr8 (592-690)||(41664906-41665004)
chr8 (611-659)||(12134850-12134898)
chr8 (611-675)||(28992782-28992846)
chr8 (599-722)||(5585200-5585323)
chr8 (591-661)||(36157657-36157727)
chr8 (244-382)||(37718973-37719111)
chr8 (659-735)||(8902398-8902474)
chr8 (137-209)||(37718866-37718938)
chr8 (587-690)||(25090886-25090989)
chr8 (599-652)||(15439635-15439688)
chr8 (599-652)||(15530939-15530992)
[»] chr6 (35 HSPs)
chr6 (384-746)||(7956153-7956516)
chr6 (384-744)||(18588644-18589005)
chr6 (28-382)||(7956544-7956882)
chr6 (253-382)||(18588487-18588616)
chr6 (592-746)||(32186187-32186341)
chr6 (587-743)||(19350443-19350599)
chr6 (627-687)||(10362672-10362732)
chr6 (592-746)||(14843619-14843773)
chr6 (611-704)||(29056042-29056135)
chr6 (611-691)||(12673655-12673735)
chr6 (641-743)||(29976493-29976595)
chr6 (307-378)||(15602513-15602584)
chr6 (587-699)||(26514223-26514335)
chr6 (651-746)||(34434823-34434918)
chr6 (610-720)||(15602846-15602956)
chr6 (587-690)||(2554105-2554208)
chr6 (593-660)||(13086044-13086111)
chr6 (611-738)||(17078680-17078807)
chr6 (587-746)||(17605816-17605975)
chr6 (621-699)||(25350755-25350833)
chr6 (627-735)||(503025-503133)
chr6 (587-746)||(10576732-10576891)
chr6 (611-746)||(11060344-11060479)
chr6 (651-737)||(10919955-10920041)
chr6 (613-679)||(10922078-10922144)
chr6 (611-661)||(23065613-23065663)
chr6 (605-746)||(1104429-1104570)
chr6 (613-746)||(17577200-17577333)
chr6 (627-735)||(19256179-19256287)
chr6 (587-690)||(13938218-13938321)
chr6 (627-690)||(18682112-18682175)
chr6 (627-661)||(8264762-8264796)
chr6 (611-661)||(18051016-18051066)
chr6 (613-690)||(14372529-14372606)
chr6 (592-653)||(21629682-21629743)
[»] chr3 (33 HSPs)
chr3 (50-382)||(14853834-14854166)
chr3 (627-699)||(52250653-52250725)
chr3 (599-746)||(31675442-31675589)
chr3 (634-746)||(31920833-31920945)
chr3 (611-746)||(44888427-44888562)
chr3 (611-740)||(19875766-19875895)
chr3 (619-687)||(48930257-48930325)
chr3 (384-451)||(14854194-14854261)
chr3 (593-735)||(55367115-55367257)
chr3 (627-735)||(6825361-6825469)
chr3 (587-690)||(2364776-2364879)
chr3 (588-735)||(25024337-25024484)
chr3 (609-663)||(8130472-8130526)
chr3 (613-741)||(18381584-18381711)
chr3 (611-690)||(31547894-31547974)
chr3 (587-690)||(10323109-10323212)
chr3 (587-746)||(12341737-12341896)
chr3 (587-690)||(19919767-19919870)
chr3 (663-738)||(9510327-9510402)
chr3 (663-738)||(9518302-9518377)
chr3 (587-690)||(53941802-53941905)
chr3 (605-723)||(5342717-5342835)
chr3 (592-735)||(19891181-19891324)
chr3 (599-722)||(22734229-22734352)
chr3 (587-690)||(34332353-34332456)
chr3 (628-687)||(46190032-46190091)
chr3 (587-735)||(48569532-48569680)
chr3 (633-692)||(14307753-14307812)
chr3 (587-654)||(16179446-16179513)
chr3 (611-661)||(21740090-21740140)
chr3 (619-661)||(36709441-36709483)
chr3 (619-661)||(45684707-45684749)
chr3 (633-746)||(40513206-40513319)
[»] chr4 (33 HSPs)
chr4 (585-746)||(7098979-7099140)
chr4 (611-719)||(9777893-9778001)
chr4 (592-723)||(29553245-29553376)
chr4 (610-699)||(40688588-40688677)
chr4 (610-699)||(19162706-19162795)
chr4 (587-746)||(9690921-9691080)
chr4 (587-690)||(23642129-23642232)
chr4 (587-690)||(23647787-23647890)
chr4 (587-690)||(47419303-47419406)
chr4 (587-741)||(2072039-2072193)
chr4 (611-672)||(48805501-48805562)
chr4 (627-723)||(2365545-2365641)
chr4 (307-377)||(54684799-54684869)
chr4 (613-735)||(55725199-55725321)
chr4 (640-701)||(38296258-38296319)
chr4 (627-735)||(8935613-8935721)
chr4 (628-684)||(36183077-36183133)
chr4 (587-690)||(5789630-5789733)
chr4 (587-690)||(19755766-19755869)
chr4 (587-690)||(19783937-19784040)
chr4 (613-690)||(48312619-48312696)
chr4 (618-746)||(54685140-54685268)
chr4 (591-723)||(23657800-23657932)
chr4 (587-735)||(54482652-54482800)
chr4 (587-690)||(1828078-1828181)
chr4 (294-349)||(19163086-19163141)
chr4 (307-350)||(40688256-40688299)
chr4 (628-675)||(41382513-41382560)
chr4 (591-661)||(49925834-49925904)
chr4 (633-687)||(52617406-52617460)
chr4 (628-682)||(56337046-56337100)
chr4 (611-660)||(4524194-4524243)
chr4 (619-687)||(29328318-29328387)
[»] chr1 (24 HSPs)
chr1 (9-105)||(39584909-39585005)
chr1 (611-746)||(22191264-22191399)
chr1 (592-746)||(3544583-3544737)
chr1 (590-741)||(19014471-19014621)
chr1 (611-714)||(3074268-3074371)
chr1 (633-743)||(28358435-28358545)
chr1 (611-720)||(21405360-21405469)
chr1 (630-687)||(45270783-45270840)
chr1 (587-690)||(6051102-6051205)
chr1 (590-746)||(1248068-1248223)
chr1 (591-735)||(25504487-25504631)
chr1 (307-378)||(30712759-30712830)
chr1 (628-735)||(38070372-38070479)
chr1 (587-653)||(35541548-35541614)
chr1 (587-675)||(5809080-5809168)
chr1 (593-661)||(39430782-39430850)
chr1 (694-746)||(43943960-43944012)
chr1 (619-746)||(13867315-13867442)
chr1 (636-699)||(40563087-40563150)
chr1 (593-660)||(49264532-49264599)
chr1 (302-349)||(9991241-9991292)
chr1 (592-690)||(47622615-47622713)
chr1 (613-699)||(52691996-52692082)
chr1 (593-658)||(20796173-20796238)
[»] chr5 (29 HSPs)
chr5 (590-712)||(42039221-42039343)
chr5 (599-746)||(476724-476871)
chr5 (590-746)||(42259782-42259938)
chr5 (587-690)||(35983329-35983432)
chr5 (587-690)||(42514219-42514322)
chr5 (610-675)||(27325286-27325351)
chr5 (568-664)||(36256255-36256354)
chr5 (627-699)||(41590635-41590707)
chr5 (587-746)||(8299664-8299823)
chr5 (614-735)||(380427-380548)
chr5 (627-699)||(4297838-4297910)
chr5 (587-653)||(25856999-25857065)
chr5 (587-684)||(30731858-30731955)
chr5 (587-675)||(12825698-12825786)
chr5 (611-675)||(26262984-26263048)
chr5 (619-738)||(22094740-22094859)
chr5 (587-690)||(27116711-27116814)
chr5 (587-690)||(28535213-28535316)
chr5 (587-690)||(31642010-31642113)
chr5 (44-100)||(32239704-32239760)
chr5 (591-738)||(20208210-20208356)
chr5 (592-735)||(27795988-27796131)
chr5 (307-349)||(36255968-36256010)
chr5 (614-678)||(22176376-22176440)
chr5 (618-690)||(42928661-42928733)
chr5 (587-690)||(23238882-23238985)
chr5 (624-746)||(10780737-10780859)
chr5 (648-746)||(18896109-18896207)
chr5 (587-653)||(27165525-27165591)
[»] scaffold0024 (2 HSPs)
scaffold0024 (587-704)||(86725-86842)
scaffold0024 (274-347)||(87113-87186)
[»] chr2 (21 HSPs)
chr2 (627-699)||(43310798-43310870)
chr2 (630-699)||(26146757-26146826)
chr2 (568-699)||(13416148-13416282)
chr2 (619-735)||(37445624-37445740)
chr2 (613-735)||(14440269-14440391)
chr2 (597-660)||(2207390-2207453)
chr2 (613-663)||(6727343-6727393)
chr2 (593-687)||(6823916-6824010)
chr2 (423-741)||(44028707-44029021)
chr2 (591-660)||(22725007-22725076)
chr2 (627-699)||(10689094-10689165)
chr2 (307-349)||(6727686-6727728)
chr2 (305-382)||(44029082-44029159)
chr2 (307-379)||(1468185-1468257)
chr2 (593-660)||(9668574-9668641)
chr2 (592-675)||(28253224-28253307)
chr2 (632-675)||(32191609-32191652)
chr2 (307-349)||(2207731-2207773)
chr2 (619-661)||(28400117-28400159)
chr2 (613-735)||(33515700-33515822)
chr2 (152-212)||(44029252-44029313)
[»] scaffold0034 (1 HSPs)
scaffold0034 (587-690)||(105381-105484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (633-699)||(55207-55273)
[»] scaffold0043 (1 HSPs)
scaffold0043 (592-734)||(34103-34245)
[»] scaffold0017 (1 HSPs)
scaffold0017 (633-699)||(143361-143427)
[»] scaffold0351 (1 HSPs)
scaffold0351 (294-349)||(12901-12956)
[»] scaffold0189 (1 HSPs)
scaffold0189 (633-684)||(6633-6684)
[»] scaffold0048 (1 HSPs)
scaffold0048 (651-701)||(63826-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (627-675)||(67619-67667)
[»] scaffold0016 (1 HSPs)
scaffold0016 (651-699)||(28337-28385)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 384 - 746
Target Start/End: Complemental strand, 17504405 - 17504041
Alignment:
Q  384 cactgccaagcctcacctccttcccccc-atccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 482  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504405 cactgccaagcctcacctccttcccccccacccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 17504306  T
Q  483 tccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccatcccc-acacgacgcgctacacactcattaaaccaaccaacac 581  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||    
T  17504305 tccctaaagggaacctcaccacaccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacac 17504206  T
Q  582 cgccccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgc 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17504205 cgccccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgc 17504106  T
Q  682 caccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||    
T  17504105 caccaacactcgataccaaagaccatctctatcaactaacatatgccaacaccacttacctaaca 17504041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 384 - 746
Target Start/End: Original strand, 17548809 - 17549173
Alignment:
Q  384 cactgccaagcctcacctccttcccccc-atccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 482  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548809 cactgccaagcctcacctccttcccccccacccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgc 17548908  T
Q  483 tccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccatcccc-acacgacgcgctacacactcattaaaccaaccaacac 581  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||    
T  17548909 tccctaaagggaacctcaccacaccaccgatcatgccaaaaaagagtagactccccatcccccacacgacgtgccacacactcattaaaccaaccaacac 17549008  T
Q  582 cgccccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgc 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17549009 cgccccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgc 17549108  T
Q  682 caccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||    
T  17549109 caccaacactcgataccaaagaccatctctatcaactaacatatgccaacaccacttacctaaca 17549173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  9 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  109 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacct 200  Q
    |||||| |||||||||| |||||| ||||||||||||||||  ||||||| ||||||||||||| |||| ||||||||||| ||||||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  9 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  109 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacct 200  Q
    |||||| |||||||||| |||||| ||||||||||||||||  ||||||| ||||||||||||| |||| ||||||||||| ||||||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 196 - 382
Target Start/End: Complemental strand, 17504619 - 17504433
Alignment:
Q  196 aacctgattatgccaaacaaggtccaccacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 295  Q
    |||||||||||||||||  || ||  | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17504520  T
Q  296 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 382  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504519 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 17504433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 196 - 382
Target Start/End: Original strand, 17548595 - 17548781
Alignment:
Q  196 aacctgattatgccaaacaaggtccaccacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 295  Q
    |||||||||||||||||  || ||  | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17548694  T
Q  296 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 382  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548695 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 17548781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 28 - 286
Target Start/End: Original strand, 15645127 - 15645385
Alignment:
Q  28 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggt 127  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||||| |    
T  15645127 cccaaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgat 15645226  T
Q  128 gccaggttagatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccaccacct 227  Q
    |||| ||||||||||||||| |    ||||| |||||| |||||  |||| | ||||||||| || |||| ||| ||||||||||  || || |   |||    
T  15645227 gccaagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcct 15645326  T
Q  228 gattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaa 286  Q
    || |||||||| || |||| |||| ||||  ||||  |||||||||||||||| |||||    
T  15645327 gagtaacctgcagtacctcgtgagttgtggtcataacatacacagaacgaacatagtaa 15645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 611 - 746
Target Start/End: Original strand, 17056052 - 17056187
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  17056052 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccacatactaccct 17056151  T
Q  711 tatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  17056152 tatcaactaataacctccaacaccatttacctaaca 17056187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 27218763 - 27218604
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    ||||| ||||| |||||||||   ||||||||||||||  | ||  |||||||||||||| || ||||||||||  ||||||||||||||||||||||||    
T  27218763 cctactccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccacca 27218664  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | ||||||||  ||||||||||| |  ||||  ||||||||||| ||||| ||||    
T  27218663 acaccctataccaaaatccacctctatctatcaacaaccgccaacaccatttacctaaca 27218604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 614 - 735
Target Start/End: Complemental strand, 19545016 - 19544895
Alignment:
Q  614 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctat 713  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |  |||||||||||||||  | | ||||||| | ||||||||  ||| ||||||    
T  19545016 tccttccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctataccaaaacccatctctat 19544917  T
Q  714 caactaacatacgccaacacca 735  Q
    | || ||||| |||||||||||    
T  19544916 ccaccaacatccgccaacacca 19544895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 611 - 738
Target Start/End: Complemental strand, 22819334 - 22819207
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||||||||| |||||||||||||| || |||||||||  |||||||||||||| | ||| |||||||| | |||||| |||| |||      
T  22819334 acctccttccaccacaaagaaacactccggcccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctataccacatactaccct 22819235  T
Q  711 tatcaactaacatacgccaacaccactt 738  Q
    |||| ||||| |  | ||||||||||||    
T  22819234 tatcgactaataacctccaacaccactt 22819207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 699
Target Start/End: Complemental strand, 45165177 - 45165088
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    |||||||||| || |||||||| | ||||||    
T  45165177 aacctccttccaccaaaaagaaccactccggcctccatcctccaacctcccatccctaacaccatatctagcaaccaacaccccatacca 45165088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 4937769 - 4937666
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  4937769 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 4937670  T
Q  687 acac 690  Q
    ||||    
T  4937669 acac 4937666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 746
Target Start/End: Complemental strand, 6336022 - 6335886
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 709  Q
    ||||||| ||||||| | |||||||||| |||||||||||||||||||||||||   | ||||||| || || |||||||| |||||||| |  || |||    
T  6336022 aacctccgtccaccaaatagaaccactctggcccccatcctccaacctcccatcgcgcacaccatacctagcaaccaacacccgataccataaccctcct 6335923  T
Q  710 ctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||| ||||| |  |  |||||||| ||||||||||    
T  6335922 ctatctactaataatcttcaacaccatttacccaaca 6335886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 699
Target Start/End: Complemental strand, 25018919 - 25018847
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||| || |||||| |||||||||||||| |||||||||||||||| ||||||||||| | ||||||    
T  25018919 aagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 701
Target Start/End: Original strand, 34104003 - 34104090
Alignment:
Q  614 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 701  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||   |||||||||| || | |||||||||||| | ||||||||    
T  34104003 tccttccaccaacaagaaccactccagcccccatcctccaacctccttgcctcctcaccgtaacgcgccaccaacaccctataccaaa 34104090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 627 - 690
Target Start/End: Complemental strand, 39931197 - 39931134
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    |||||| ||||||||||||||||||||||| |||||||||| ||||||| || |||||||||||    
T  39931197 aagaacaactccggcccccatcctccaaccgcccatcctccacaccatacctagccaccaacac 39931134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 235079 - 234976
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  235079 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 234980  T
Q  687 acac 690  Q
    ||||    
T  234979 acac 234976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 17721134 - 17721237
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  17721134 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 17721233  T
Q  687 acac 690  Q
    ||||    
T  17721234 acac 17721237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 746
Target Start/End: Original strand, 31423101 - 31423260
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | |  | |||| || ||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||  || |||||||    
T  31423101 cctatcccatctctaatcctgactatctccctcaaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatgcctagccacca 31423200  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||| | |||| | |||||||||||||  ||||||||||| || |||||||    
T  31423201 acaccctacgccacaaaccatccctatcaactaacaaccgccaacaccatttccccaaca 31423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 723
Target Start/End: Complemental strand, 8752973 - 8752901
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 723  Q
    ||||||||||| |||||||||||||||||||||||| ||| | |||||| || || |||||||| || |||||    
T  8752973 ccaacctcccagcctcctcaccatatctcgccaccagcaccctataccacatccctcctctatccaccaacat 8752901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 551567 - 551464
Alignment:
Q  244 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 343  Q
    |||||||  ||||||||||| ||| ||   ||||||||||||| |  | ||||| || ||||||||||||||||||||| | ||| ||| ||||||||||    
T  551567 ctcctgatttgtgagcatatcatataccccacgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctgcaaagaa 551468  T
Q  344 acat 347  Q
    ||||    
T  551467 acat 551464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 45165523 - 45165468
Alignment:
Q  294 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    |||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  45165523 aagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 45165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 47877482 - 47877584
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||| ||||||||||||| |  |||||| || ||||||| || |||||||    
T  47877482 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccgg-ccccatcctccaaacctccatccgccacaccatacctagccacca 47877580  T
Q  687 acac 690  Q
    ||||    
T  47877581 acac 47877584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 29557447 - 29557497
Alignment:
Q  325 agaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaa 375  Q
    |||||||  |||||||||||||| ||||| |||||||||||||||||||||    
T  29557447 agaaagattctgcaaagaaacatcaagtagtaacatcctacactcctctaa 29557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 33795966 - 33795924
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||| |||||||||||||||||||| ||||||||||||||    
T  33795966 ccaccacgaagaaccactccggcccccaccctccaacctccca 33795924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 39694660 - 39694702
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacatta 39694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 6343579 - 6343520
Alignment:
Q  319 atcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 378  Q
    |||| ||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6343579 atcaaaagaaagaggctgcaaagaaacatta-gtaagtaacaacctacactcctctaaaag 6343520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 699
Target Start/End: Original strand, 20349463 - 20349574
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| |||||| |||||||||   | |||| ||||||| | ||||||||||| ||||| | |||||||||||||  ||||||||||||| |  |||||||    
T  20349463 cctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctgccccta-cctccaacctccctgcctcctcaccataccgagccacca 20349561  T
Q  687 acactcgatacca 699  Q
    |||| | ||||||    
T  20349562 acaccctatacca 20349574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 723
Target Start/End: Complemental strand, 23054548 - 23054476
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 723  Q
    ||||||||||  |||||||||||| ||| ||| ||||||| | ||||||||  || |||||||||||||||||    
T  23054548 ccaacctccctgcctcctcaccatgtctagccgccaacaccctataccaaaaccctcctctatcaactaacat 23054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 551674 - 551599
Alignment:
Q  137 gatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgccaaa 212  Q
    ||||| ||||| || ||||||| || ||| |||||  |||||||||||||||| | ||||||||| ||||||||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaa 551599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 11276889 - 11276786
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| | |||| ||||||| ||||||||||||| |  |||||| || ||||||| || ||||| |    
T  11276889 cctatcccatctctaatcctcactatctccctccaccacgacgaacaactccgggccccatcctccaaacctccatccgccacaccatacctagccacta 11276790  T
Q  687 acac 690  Q
    ||||    
T  11276789 acac 11276786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 701
Target Start/End: Original strand, 11341326 - 11341409
Alignment:
Q  618 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 701  Q
    ||||||| || |||| ||||||||||||  |||||||||||||  ||||||||||||| || ||  ||||||| | ||||||||    
T  11341326 tccaccaaaaggaacaactccggcccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctataccaaa 11341409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 658 - 701
Target Start/End: Complemental strand, 41805328 - 41805285
Alignment:
Q  658 cccatcctcctcaccatatctcgccaccaacactcgataccaaa 701  Q
    |||| |||||||||||||||||||||||||||| | ||||||||    
T  41805328 cccaacctcctcaccatatctcgccaccaacaccctataccaaa 41805285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 18767939 - 18767981
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  18767939 ccaccacaaagaaacactccggccccccacctccaacctccca 18767981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 34457767 - 34457725
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  34457767 ccaccacaaagaaacactccggccccccacctccaacctccca 34457725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 617 - 722
Target Start/End: Complemental strand, 15124443 - 15124338
Alignment:
Q  617 ttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaa 716  Q
    ||||||||||  |||| |||||| ||||||||||||||||| |||| | ||  |||||| | ||||| |||||| | |||||||| || | || |||| |    
T  15124443 ttccaccacatggaacaactccgacccccatcctccaacctaccatgcaccctaccataccgcgccaacaacaccctataccaaagactatctatatcga 15124344  T
Q  717 ctaaca 722  Q
    ||||||    
T  15124343 ctaaca 15124338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 20918482 - 20918547
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    ||||||| |||||||||||||||||||||| |||||| |   |||||||||  ||| |||||||||    
T  20918482 aacctccctccaccacaaagaaccactccgacccccaactggcaacctccctgccttctcaccata 20918547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 45976643 - 45976574
Alignment:
Q  28 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaa 97  Q
    ||||||||||| |||||| | |||||| |||| ||||||||||||||| || || || |||| |||||||    
T  45976643 cccaaagcaagtacacgacaaaaacaagtgacgagcatcctccacctgaccacatccagaaagacacaaa 45976574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 9 - 382
Target Start/End: Original strand, 25890957 - 25891330
Alignment:
Q  9 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 108  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  109 attaagaataccacgtggtgccaggttagatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgc 208  Q
     ||||| |||||||||| |||||  ||||||||||||||||  ||||||| ||||||||||||  |||| ||||||||||| ||||||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  209 caaacaaggtccaccacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaacc 308  Q
    ||||  |||||  | |||||| ||||||||||| ||||||||| ||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagcatataatacacagaacggccagaataaacgcctgagggatctggtaacc 25891256  T
Q  309 actgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 382  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25891257 actgccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 25891330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 587 - 691
Target Start/End: Original strand, 42649718 - 42649822
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||  ||||||||| || ||| |||||||||  ||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  42649718 cctatcccatccataatcttcacaatctcattccaccacgtagaaccactccggcccccatctttcaacctcccgtcctcctcaccatatctagccacca 42649817  T
Q  687 acact 691  Q
    |||||    
T  42649818 acact 42649822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 36492920 - 36493028
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 726  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| | |||||| | || ||  || ||||| |||| |||    
T  36492920 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaactactcctctcaaccaacaaacg 36493019  T
Q  727 ccaacacca 735  Q
    |||||||||    
T  36493020 ccaacacca 36493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 746
Target Start/End: Original strand, 20824798 - 20824957
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  20824798 cctatcccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 20824897  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  20824898 acaccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaaca 20824957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 610 - 664
Target Start/End: Complemental strand, 4310460 - 4310406
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 664  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4310460 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 4310406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 633 - 735
Target Start/End: Original strand, 36025066 - 36025168
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 732  Q
    |||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||| |||| |||||| |  || |||||||| || ||||| ||||||||    
T  36025066 cactccggtccccaacctccaaccgcccagcctcctcaccatatctcgccaccaaaactctataccataaccctcctctatccaccaacatccgccaaca 36025165  T
Q  733 cca 735  Q
    |||    
T  36025166 cca 36025168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  9 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 61  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 592 - 735
Target Start/End: Complemental strand, 29721546 - 29721403
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| |||||||||   | |||| |||||||  ||||  |||||||||||||  ||||||||||||||  |||||||||||||||||||||||| ||     
T  29721546 cccatccctaatcttcgctatctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccaccaaaacc 29721447  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    | |||||| |  ||||||  |||||||||||| | |||||||||    
T  29721446 ctataccacaacccaccttgatcaactaacatcctccaacacca 29721403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 690
Target Start/End: Original strand, 7924890 - 7924988
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |||||    
T  7924890 cccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccactaacac 7924988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 628 - 738
Target Start/End: Complemental strand, 37165721 - 37165611
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 727  Q
    |||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||  || | |||||| |  || |||||||| |||||||| | |    
T  37165721 agaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctataccacaagcctcctctatccactaacatcctc 37165622  T
Q  728 caacaccactt 738  Q
    ||||| |||||    
T  37165621 caacatcactt 37165611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 651 - 735
Target Start/End: Original strand, 12332411 - 12332495
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| || ||  || || ||||| | ||||||||||||    
T  12332411 ccaacctcccatcctcctcaccatatctcgccaccaacaccctataccaaagactacacctctccactaataaacgccaacacca 12332495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 610 - 746
Target Start/End: Original strand, 18187668 - 18187804
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 709  Q
    |||||||||||||||||||||||||||||||||| || |  |||||| |||  |||||||||||||||   | |||| | | | |||||| | |||||||    
T  18187668 aacctccttccaccacaaagaaccactccggccctcaactgccaaccgccctacctcctcaccatatcaatcaaccagctccctataccacaaaccacct 18187767  T
Q  710 ctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||| |||||||  | ||||||||| ||||| ||||    
T  18187768 ctatctactaacaatctccaacaccatttacctaaca 18187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 699
Target Start/End: Original strand, 25193587 - 25193699
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| |||||| |||||||||   | |||| |||||||  ||||| |||||||||||||  |||||||||||||| ||||||||||||| | | ||||||    
T  25193587 cctatcccatccctaatcttcgctatctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccacca 25193686  T
Q  687 acactcgatacca 699  Q
    |||| ||||||||    
T  25193687 acacccgatacca 25193699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 172680 - 172577
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  172680 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 172581  T
Q  687 acac 690  Q
    ||||    
T  172580 acac 172577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 8300302 - 8300405
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  8300302 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 8300401  T
Q  687 acac 690  Q
    ||||    
T  8300402 acac 8300405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 735
Target Start/End: Complemental strand, 13879128 - 13878980
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||||| |  | |||| |||||||| |||||| |||| |||||||||||||||| |  |||||| || ||||||| || |||||||    
T  13879128 cctatcccatctctaatcttgactatctccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccacca 13879029  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    |||| | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  13879028 acaccctacgccataacccctctctatcaactaacaaccgccaacacca 13878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 9923100 - 9923203
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  9923100 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 9923199  T
Q  687 acac 690  Q
    ||||    
T  9923200 acac 9923203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 746
Target Start/End: Original strand, 17659354 - 17659489
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || |||||||||||||  ||||  |    
T  17659354 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccataacgggcgactaagactcgataccaaaagccactcc 17659453  T
Q  711 tatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||||||| ||| | ||||||||||||||| ||||    
T  17659454 tatcaactagcatcctccaacaccacttacctaaca 17659489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 738
Target Start/End: Original strand, 12341107 - 12341217
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 727  Q
    |||| ||||||||| |||| ||||||||| |||| ||||||||||||| ||||||||||  || | | |||| |  || |||||||| |||||||| | |    
T  12341107 agaaacactccggctcccaacctccaaccgcccagcctcctcaccatacctcgccaccagtaccctaaaccacaaccctcctctatccactaacatcctc 12341206  T
Q  728 caacaccactt 738  Q
    |||||||||||    
T  12341207 caacaccactt 12341217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 675
Target Start/End: Original strand, 38046883 - 38046945
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||| |||| ||| |||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  38046883 ctccctccatcacgaagaacaacttcggcccccatcctccaacctcccatcctccacaccata 38046945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 41665004 - 41664906
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |||||    
T  41665004 cccatctctaatcctcactatctccatccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccactaacac 41664906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 659
Target Start/End: Original strand, 12134850 - 12134898
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcc 659  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  12134850 acctcctgccaccataaagaaccactccggcccccaacctccaacctcc 12134898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 675
Target Start/End: Complemental strand, 28992846 - 28992782
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||||| |||||||| ||||| ||||| |||||||| ||| ||||||| ||||||||||||||||    
T  28992846 acctccctccaccacgaagaaacactctggcccccaaccttcaacctctcatcctcctcaccata 28992782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 722
Target Start/End: Original strand, 5585200 - 5585323
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 698  Q
    ||||||||||  | ||| ||||||||||  |||| |||||||||||||||||||||||| |||| | || |||||||||  | || |||||| | ||||     
T  5585200 ctaatcttcactatctctttccaccacatggaacaactccggcccccatcctccaacctaccatgcaccgcaccatatcgtgtcaacaacaccctataca 5585299  T
Q  699 aaataccacctctatcaactaaca 722  Q
    | | || ||||||||| |||||||    
T  5585300 acagactacctctatcgactaaca 5585323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 661
Target Start/End: Original strand, 36157657 - 36157727
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    |||||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  36157657 ccccatctctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctccca 36157727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 244 - 382
Target Start/End: Original strand, 37718973 - 37719111
Alignment:
Q  244 ctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaa 343  Q
    |||||||| ||||||||||| ||||||   | ||||||||||  |  | |||||  | |||||||| ||||||||| |||| ||||||| ||||||||||    
T  37718973 ctcctgagttgtgagcatatcatacactccatgaacagagtagccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctgcaaagaa 37719072  T
Q  344 acattaagtaataacatcctacactcctctaaaagatcc 382  Q
    |||| |   ||||| | || ||||||| |||||||||||    
T  37719073 acatcataaaataataaccgacactccgctaaaagatcc 37719111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 659 - 735
Target Start/End: Original strand, 8902398 - 8902474
Alignment:
Q  659 ccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    ||||||||||||||||| |  ||||| ||||| | |||||| |  ||| |||||||||||||||| |||||||||||    
T  8902398 ccatcctcctcaccataacgagccactaacaccctataccacaagccagctctatcaactaacatccgccaacacca 8902474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 37718866 - 37718938
Alignment:
Q  137 gatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgcc 209  Q
    ||||| |||||||| ||||||| |||||| |||||  |||||||||||||||| |  |||||||| |||||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcc 37718938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 25090886 - 25090989
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | |  | |||| |||||||| ||||||  |||||||||||||||||||| |  |||||| || |||||||  | |||||||    
T  25090886 cctatcccatctctaatcctgactatctccctccaccacgaagaacagctccggcccccatcctccaaaccaccatccgccacaccatacatagccacca 25090985  T
Q  687 acac 690  Q
    ||||    
T  25090986 acac 25090989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 652
Target Start/End: Original strand, 15439635 - 15439688
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcc 652  Q
    ||||||||||  || ||||||||||| |||||||| |||||||||||| |||||    
T  15439635 ctaatcttcactacttccttccaccaaaaagaaccgctccggcccccaacctcc 15439688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 652
Target Start/End: Original strand, 15530939 - 15530992
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcc 652  Q
    ||||||||||  || ||||||||||| |||||||| |||||||||||| |||||    
T  15530939 ctaatcttcactacttccttccaccaaaaagaaccgctccggcccccaacctcc 15530992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 384 - 746
Target Start/End: Complemental strand, 7956516 - 7956153
Alignment:
Q  384 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgct 483  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||| |||| ||  | |||||| ||||||| ||| | ||| ||||    
T  7956516 cactgccaagcctcacctccttctccccacccttgtaaaaacatatctttaaccgttattgattgatgtaacgctaaaccatataacctgctaaagcgct 7956417  T
Q  484 ccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccatcccc-acacgacgcgctacacactcattaaaccaaccaacacc 582  Q
    ||||||| ||||| | ||||||||||||||||||||||||||| || || | |||| |||| ||||||||| | ||||||||| ||||||||||  ||||    
T  7956416 ccctaaaaggaacatcaccacaccaccgatcatgccaaaaaagcgttgatttcccaccccccacacgacgcaccacacactcactaaaccaaccttcacc 7956317  T
Q  583 gccccc-taccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgc 681  Q
    |||||| |||||| ||||||||||||| ||||| ||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||    
T  7956316 gcccccctaccccttctctaatcttcacaaccttcttccaccataaagaaccactccggcctc-atcctccaacctcccgtcctcctcaccatatctagc 7956218  T
Q  682 caccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  7956217 caccaacactcgataccaaagaccatctctatcaactaacatacgccaacatcacttacccaaca 7956153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 384 - 744
Target Start/End: Original strand, 18588644 - 18589005
Alignment:
Q  384 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgct 483  Q
    |||||||| |||||||||||||||||||| ||| | |||||||||||||| ||  |||| |||||||  | |  |||  |||||| ||| | ||| ||||    
T  18588644 cactgccatgcctcacctccttccccccaccctcgaaaaaacatatctttaactgttattgatttatgcatcattaaatcatataacctgctaaagcgct 18588743  T
Q  484 ccctaaagggaacctgaccacaccaccgatcatgccaaaaaagtgtagactccccatccc-cacacgacgcgctacacactcattaaaccaaccaacacc 582  Q
    ||||||| | ||| | ||||||||| ||||||||||||||||| || || |||||||||| |||||  ||| | ||||||||| ||||||| ||| ||||    
T  18588744 ccctaaaagaaacatcaccacaccaacgatcatgccaaaaaagcgttgattccccatcccgcacacatcgcaccacacactcactaaaccatccatcacc 18588843  T
Q  583 gccccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgcc 682  Q
    |||||| | |||||||||||| |||| |||||||| |||||| |||||||||   || |||||||||||||||||||| ||||||||||||||||| |||    
T  18588844 gccccccaacccatctctaatattcacaacctcctcccaccataaagaaccaacacgacccccatcctccaacctcccgtcctcctcaccatatctagcc 18588943  T
Q  683 accaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaa 744  Q
    ||||||||||||||||| |  ||  ||||||||||||||| |||||||||||||||||||||    
T  18588944 accaacactcgataccataacccgtctctatcaactaacaaacgccaacaccacttacccaa 18589005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 28 - 382
Target Start/End: Complemental strand, 7956882 - 7956544
Alignment:
Q  28 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggt 127  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| | |    
T  7956882 cccaaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagat 7956783  T
Q  128 gccaggttagatttagtaggtaatcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccaccacct 227  Q
    |||| ||||||||||||||| |  ||||||| |||||  |||||  |||| | ||||||||| || |||||||| ||||||||||  |  || ||  |||    
T  7956782 gccaagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaattaaatcgacatcct 7956683  T
Q  228 gattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataaga 327  Q
     | |||| ||||                |||||||  ||||| |||||||||| ||||| |  |||| ||||| |||||||||||||| |||||||||||    
T  7956682 aagtaacatgcg----------------gagcataacatacatagaacgaacaaagtaaccttctgagggatccggtaaccactgccacacatcataaga 7956599  T
Q  328 aagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 382  Q
    ||||| |||||||||||||||| | | ||||| |||| |||||||||||||||||    
T  7956598 aagagactgcaaagaaacattatgaagtaacaacctagactcctctaaaagatcc 7956544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 253 - 382
Target Start/End: Original strand, 18588487 - 18588616
Alignment:
Q  253 tgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagt 352  Q
    ||||||||||  |||||||||||||||||||||| | | ||| ||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||     
T  18588487 tgtgagcatagcatacacagaacgaacagagtaacctcttgatggatccggtaaccactaccacacatcataagaaagaggctgcaaagaaacattaaga 18588586  T
Q  353 aataacatcctacactcctctaaaagatcc 382  Q
    | ||||| ||||||||||||||||||||||    
T  18588587 agtaacaacctacactcctctaaaagatcc 18588616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 592 - 746
Target Start/End: Original strand, 32186187 - 32186341
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| ||||||||||  |||||| |||||||  ||||| |||||||||||||| |||||||||||||| || |||||| ||||||||||||||||||     
T  32186187 cccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaacacc 32186286  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    | ||||||||  ||||||||||| || ||||   |||||||||| ||| ||||||    
T  32186287 ctataccaaaacccacctctatccaccaacaactgccaacaccatttatccaaca 32186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 587 - 743
Target Start/End: Original strand, 19350443 - 19350599
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    ||||| ||||| |||||||||   ||||||||||||||  | ||  |||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  19350443 cctactccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccacca 19350542  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttaccca 743  Q
    |||| | ||||||||  ||||||||||| |  ||||  ||||||||||| |||||||    
T  19350543 acaccctataccaaaacccacctctatctatcaacaaccgccaacaccatttaccca 19350599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 627 - 687
Target Start/End: Original strand, 10362672 - 10362732
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  10362672 aagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaa 10362732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 592 - 746
Target Start/End: Complemental strand, 14843773 - 14843619
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| ||||||||||  || |||||||||||  | |||  |||||| |||||  |||||||||||||   |||||||||||||||||| |||| |||     
T  14843773 cccatccctaatcttcactacttccttccaccaagatgaagtactccgtccccctacctccaacctccctgtctcctcaccatatctcgctaccagcacc 14843674  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  14843673 ctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 14843619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 611 - 704
Target Start/End: Original strand, 29056042 - 29056135
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 704  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| |  || |||||||| | |||||| ||||    
T  29056042 acctccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctataccacatac 29056135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 611 - 691
Target Start/End: Complemental strand, 12673735 - 12673655
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||||||||||||||||| | |||||| | ||||||||||||||||  ||||||||||||||| || ||||||||||||    
T  12673735 acctccttccaccacaaagagcaactccgactcccatcctccaacctcatatcctcctcaccatacctagccaccaacact 12673655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 641 - 743
Target Start/End: Complemental strand, 29976595 - 29976493
Alignment:
Q  641 cccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttac 740  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||| | ||||||||  ||||||||||| |  ||||  ||||||| ||| ||||    
T  29976595 cccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctataccaaaacccacctctatctatcaacaaccgccaacgccatttac 29976496  T
Q  741 cca 743  Q
    |||    
T  29976495 cca 29976493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 15602513 - 15602584
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 378  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaag 15602584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 699
Target Start/End: Original strand, 26514223 - 26514335
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| |||||| |||||||||   | |||| ||||||| | ||||||||||||||||||| ||||||| |||||  ||||||||||||| |  |||||||    
T  26514223 cctatcccatccctaatcttcgctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccacca 26514322  T
Q  687 acactcgatacca 699  Q
    |||||| ||||||    
T  26514323 acactctatacca 26514335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 651 - 746
Target Start/End: Original strand, 34434823 - 34434918
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||||||||||||||||||||||||||||||||||| || | |||||| |||| ||  || || || ||||| ||||||||||| ||||| ||||    
T  34434823 ccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccatatactactcctctctaccaacatccgccaacaccatttacctaaca 34434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 610 - 720
Target Start/End: Original strand, 15602846 - 15602956
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacct 709  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||   | ||||||| || || ||||||||  ||||||| |  || | |    
T  15602846 aacctccatccaccaaatagaaccactccggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgataccataaccctctt 15602945  T
Q  710 ctatcaactaa 720  Q
    |||||||||||    
T  15602946 ctatcaactaa 15602956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 2554105 - 2554208
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||| | |||| | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  2554105 cctatcccatctctaaccctcattatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 2554204  T
Q  687 acac 690  Q
    ||||    
T  2554205 acac 2554208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 660
Target Start/End: Original strand, 13086044 - 13086111
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    |||||||||||| ||   |||||||||||||| ||||||| ||||||||||||| |||||||||||||    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccc 13086111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 738
Target Start/End: Complemental strand, 17078807 - 17078680
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || ||||||||||||| |||||  |    
T  17078807 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctacttcgccataacgggcgactaagactcgataccaaaaaccactcc 17078708  T
Q  711 tatcaactaacatacgccaacaccactt 738  Q
    ||||||||| ||| | ||||||||||||    
T  17078707 tatcaactagcatcctccaacaccactt 17078680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 17605975 - 17605816
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| ||||| |  |||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  17605975 cctatcccatctctaatcctcacaatctccctccacaaagaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 17605876  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  17605875 acaccctactccacaaacctcccctatcaactaacagccaccaacaccatttccccaaca 17605816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 699
Target Start/End: Original strand, 25350755 - 25350833
Alignment:
Q  621 accacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||| |||||| |||||||||||||  || ||||||||||| ||||||||||||| | |||||||||||| | ||||||    
T  25350755 accaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 25350833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 735
Target Start/End: Complemental strand, 503133 - 503025
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 726  Q
    |||||| ||||||||||||||||||||||||||||  | |||| ||||| |  || || || |||| ||| |||| |||||| ||||| |||||||| |     
T  503133 aagaacaactccggcccccatcctccaacctcccacacacctcgccataacgggcgactaaaactctatatcaaaaaccacccctatccactaacatcct 503034  T
Q  727 ccaacacca 735  Q
    |||||||||    
T  503033 ccaacacca 503025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 10576891 - 10576732
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | |  | |||| |||||||| |||| | ||||||||||||||||||||| |  |||||| || ||||||| || |||| ||    
T  10576891 cctatcccatctctaatcctaactatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaaca 10576792  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||  | ||| || |||||||||||||  ||||||||||| || |||||||    
T  10576791 acaccctactccgcaaacctcccctatcaactaacagccgccaacaccatttccccaaca 10576732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 746
Target Start/End: Complemental strand, 11060479 - 11060344
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    |||||| |||||||  |||||| ||||||||||||| |||||||||||||| |    || ||||| |  || || || |||||||||||||  ||||  |    
T  11060479 acctccctccaccaagaagaacaactccggcccccaacctccaacctcccacctaattcgccataacgggcaactaagactcgataccaaaagccactcc 11060380  T
Q  711 tatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||||||| ||| | ||||||||||||||| ||||    
T  11060379 tatcaactagcatcctccaacaccacttacctaaca 11060344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 737
Target Start/End: Complemental strand, 10920041 - 10919955
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccact 737  Q
    ||||||||||  ||||||||||||| || || |||||||| | ||||||||  || ||||||||||| ||||| | |||||||||||    
T  10920041 ccaacctccccgcctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacaccact 10919955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 613 - 679
Target Start/End: Original strand, 10922078 - 10922144
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctc 679  Q
    |||| |||||||  |||||| ||||||||||||||||| || ||| ||||||||| |||||||||||    
T  10922078 ctccctccaccaagaagaacaactccggcccccatccttcagccttccatcctccacaccatatctc 10922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 661
Target Start/End: Complemental strand, 23065663 - 23065613
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||| ||||||| |||||||||||||||||||  ||||||||||||||    
T  23065663 acctcctgccaccacgaagaaccactccggccccccacctccaacctccca 23065613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 746
Target Start/End: Complemental strand, 1104570 - 1104429
Alignment:
Q  605 ttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 704  Q
    |||| ||| ||| ||||| ||||||||| |||| |||||||| || |||||||| |  ||||||||||||| |  || |||| ||| | |||||| | ||    
T  1104570 ttcacaacttccctccacaacaaagaactactcaggcccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaac 1104471  T
Q  705 cacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||| |||||  ||||||| || ||||||||| ||||| ||||    
T  1104470 cacatctatttactaacaaactccaacaccatttacctaaca 1104429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 746
Target Start/End: Complemental strand, 17577333 - 17577200
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 712  Q
    |||| ||||||||||||||| |||| |||||||||||||||| |   |||||||| | ||||| || |||| |||||| | |  ||| | ||| || |||    
T  17577333 ctccctccaccacaaagaacaactctggcccccatcctccaaaccatcatcctccacgccatacctagccaacaacaccctactccacaaacctccccta 17577234  T
Q  713 tcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||||||||  | ||||||||| || |||||||    
T  17577233 tcaactaacagcctccaacaccatttccccaaca 17577200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 19256179 - 19256287
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 726  Q
    |||||| |||| |||||||| ||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  19256179 aagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaactctataccaaaaaccacccctatccactaacatcct 19256278  T
Q  727 ccaacacca 735  Q
    |||||||||    
T  19256279 ccaacacca 19256287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 13938218 - 13938321
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | ||||| ||||||  | |||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  13938218 cctatcccatctctaatcctcactatctcctgccaccaagatgaacaactccggcccccatcctccaaaccaccatccgccgcaccatacctagccacta 13938317  T
Q  687 acac 690  Q
    ||||    
T  13938318 acac 13938321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 690
Target Start/End: Complemental strand, 18682175 - 18682112
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    |||||| ||||||||||||||||||||| |  |||||||||  |||||| || |||||||||||    
T  18682175 aagaacaactccggcccccatcctccaaacctccatcctccgaaccatacctggccaccaacac 18682112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 627 - 661
Target Start/End: Original strand, 8264762 - 8264796
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctccca 661  Q
    |||||| ||||||||||||||||||||||||||||    
T  8264762 aagaacaactccggcccccatcctccaacctccca 8264796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 661
Target Start/End: Complemental strand, 18051066 - 18051016
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  18051066 acctccctccaccaagaagaacaactccggcccccaacctccaacctccca 18051016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 690
Target Start/End: Complemental strand, 14372606 - 14372529
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    |||| |||||||  |||||| ||||||||||||||||||||| ||  | ||| || ||||||| || |||||||||||    
T  14372606 ctccctccaccaagaagaacaactccggcccccatcctccaaactttcgtccgccacaccatacctagccaccaacac 14372529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 592 - 653
Target Start/End: Complemental strand, 21629743 - 21629682
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 653  Q
    ||||||||||||| | | || |||| |||||||| |||| | ||||||||||||||||||||    
T  21629743 cccatctctaatcctaacaatctccctccaccacgaagagcaactccggcccccatcctcca 21629682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 9e-69; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 50 - 382
Target Start/End: Original strand, 14853834 - 14854166
Alignment:
Q  50 aacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtggtgccaggttagatttagtaggta 149  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||| ||||| |||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  150 atcgatcacagagcagtcgccacacaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccaccacctgattaacctgcggtgcctcctg 249  Q
      ||||||| |||||| |||||  |||| | ||||||||| ||  ||||||| ||||||||||  |  || ||  ||||| ||||||||||| |||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  250 agatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    || ||||||||||  ||||| |||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14854034 agttgtgagcataacatacatagaacgaacaaagtaatcacctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacatta 14854133  T
Q  350 agtaataacatcctacactcctctaaaagatcc 382  Q
    || | |||||| |||||||||||||||||||||    
T  14854134 agaagtaacattctacactcctctaaaagatcc 14854166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 627 - 699
Target Start/End: Complemental strand, 52250725 - 52250653
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52250725 aagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctatacca 52250653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 599 - 746
Target Start/End: Original strand, 31675442 - 31675589
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 698  Q
    ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||| |||||| ||| | |||||    
T  31675442 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctatacc 31675541  T
Q  699 aaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||| |||||||||||| || ||||| ||||||||||| ||||| ||||    
T  31675542 aaaaaccacctctatccaccaacattcgccaacaccatttacctaaca 31675589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 634 - 746
Target Start/End: Complemental strand, 31920945 - 31920833
Alignment:
Q  634 actccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacac 733  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||| |||||| ||| | |||||||| |||||||||||| || ||||| |||||||||    
T  31920945 actccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccctataccaaaaaccacctctatccaccaacattcgccaacac 31920846  T
Q  734 cacttacccaaca 746  Q
    || ||||| ||||    
T  31920845 catttacctaaca 31920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 611 - 746
Target Start/End: Original strand, 44888427 - 44888562
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||| ||||| ||||||| ||| || || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  44888427 acctccttccaccacgaagaaacactccgaccctcaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctataccacatactaccct 44888526  T
Q  711 tatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  44888527 tatcaactaataacctccaacaccatttacctaaca 44888562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 611 - 740
Target Start/End: Original strand, 19875766 - 19875895
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||  | ||  |||||||||||||| ||||||||||||   |||||||||||||||||||||||||||| | ||||||||  |||||||    
T  19875766 acctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccctataccaaaacccacctc 19875865  T
Q  711 tatcaactaacatacgccaacaccacttac 740  Q
    |||| |  ||||  ||||||||||| ||||    
T  19875866 tatctatcaacaaccgccaacaccatttac 19875895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 619 - 687
Target Start/End: Original strand, 48930257 - 48930325
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48930257 ccaccacgcagaaccactccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaa 48930325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 384 - 451
Target Start/End: Original strand, 14854194 - 14854261
Alignment:
Q  384 cactgccaagcctcacctccttccccccatccttgtaaaaacatatcttttaccattatagatttatt 451  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||||    
T  14854194 cactgccaagcctcacctccttccccccacccttgtaaaaacatatctttaaccgttattgatttatt 14854261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 593 - 735
Target Start/End: Original strand, 55367115 - 55367257
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactc 692  Q
    ||||||||||||||| | | |||| ||||||| || ||| |||||||||||||  ||||||||||| |  ||||||||||||||||||| | ||| ||      
T  55367115 ccatctctaatcttcgttatctccatccaccaaaaggaatcactccggccccctacctccaacctctctgcctcctcaccatatctcgctaacaaaacct 55367214  T
Q  693 gataccaaataccacctctatcaactaacatacgccaacacca 735  Q
     |||||| |  |||||||||||||||||||| | |||||||||    
T  55367215 tataccacaacccacctctatcaactaacatcctccaacacca 55367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 6825361 - 6825469
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 726  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| | || ||  || ||||| |||| |||    
T  6825361 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaactactcctctcaaccaacaaacg 6825460  T
Q  727 ccaacacca 735  Q
    |||||||||    
T  6825461 ccaacacca 6825469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 2364776 - 2364879
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  2364776 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 2364875  T
Q  687 acac 690  Q
    ||||    
T  2364876 acac 2364879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 588 - 735
Target Start/End: Complemental strand, 25024484 - 25024337
Alignment:
Q  588 ctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||| |||||||||||| |   ||||||  |||||||  |||||| |||||| |||||| || ||||||||||  |||||||||||||||| ||  ||||    
T  25024484 ctactccatctctaatcctatcaacctctctccaccaataagaacaactccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaa 25024385  T
Q  688 cactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    ||| | |||||||| |||| ||||||| |||||||| | |||||||||    
T  25024384 caccctataccaaaaaccatctctatccactaacatcctccaacacca 25024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 8130472 - 8130526
Alignment:
Q  609 taacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 663  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  8130472 taacctccttccaccaaaaagaaccactccggcccccaacctccaacctcccatc 8130526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 613 - 741
Target Start/End: Original strand, 18381584 - 18381711
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 712  Q
    |||| ||||||| | |||| ||||||| |||| | | |||||||| |||||||| |||||||||||||||||||| || | |||||| |  || ||||||    
T  18381584 ctccctccaccaaatagaaacactccgcccccta-catccaaccttccatcctcgtcaccatatctcgccaccaaaacccaataccataaccctcctcta 18381682  T
Q  713 tcaactaacatacgccaacaccacttacc 741  Q
    ||||| ||||| | |||||||||||||||    
T  18381683 tcaaccaacattctccaacaccacttacc 18381711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 611 - 690
Target Start/End: Original strand, 31547894 - 31547974
Alignment:
Q  611 acctccttccaccacaaagaaccactccggccccc-atcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||||||||||| ||||| ||||||||||||| | || ||||||||||||||||||||||||| | ||| ||||||||    
T  31547894 acctccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctaccaacac 31547974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 10323212 - 10323109
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||  ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  10323212 cctatcccatctctaatcctcacaatctccctccaccacgaagaataactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 10323113  T
Q  687 acac 690  Q
    ||||    
T  10323112 acac 10323109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 12341896 - 12341737
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | | || |||| |||||||| |||| | ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  12341896 cctatcccatctctaatcctaacaatctccctccaccacgaagagcaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 12341797  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||| | ||| || |||||||||||||  ||||||||||| || |||||||    
T  12341796 acaccctactccacaaacctcccctatcaactaacagccgccaacaccatttccccaaca 12341737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 19919870 - 19919767
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |   |||||||| ||||||| || ||||| |    
T  19919870 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgtcatcctccacaccatacctagccacta 19919771  T
Q  687 acac 690  Q
    ||||    
T  19919770 acac 19919767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 738
Target Start/End: Original strand, 9510327 - 9510402
Alignment:
Q  663 cctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccactt 738  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9510327 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9510402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 663 - 738
Target Start/End: Original strand, 9518302 - 9518377
Alignment:
Q  663 cctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccactt 738  Q
    ||||||||||||| || ||  ||||||| |||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  9518302 cctcctcaccataccttgcagccaacacccgataccaaaaaccacctctattaactaacatcctccaacaccactt 9518377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 53941802 - 53941905
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    ||||| ||||| |||||||||   | |||| ||||| | |||||| |||||||||||||  || ||||||||||| ||||||||||||| | ||||||||    
T  53941802 cctactccatccctaatcttcgctatctccctccactaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccacca 53941901  T
Q  687 acac 690  Q
    ||||    
T  53941902 acac 53941905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 723
Target Start/End: Complemental strand, 5342835 - 5342717
Alignment:
Q  605 ttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaatac 704  Q
    |||| ||||||| |||||||| |||||||||||||||||| ||||||||||||| |  |||||| | |||| |  ||||| || || | |||||| | ||    
T  5342835 ttcacaacctccctccaccacgaagaaccactccggcccctatcctccaacctctctacctccttaacataacgagccacaaatacgctataccataaac 5342736  T
Q  705 cacctctatcaactaacat 723  Q
    | | |||||||||||||||    
T  5342735 ctcttctatcaactaacat 5342717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 735
Target Start/End: Original strand, 19891181 - 19891324
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    ||||||||||||| | |  | |||| |||||||| |||||| ||| ||||||||||||||||| |  |||||  || ||||||| || |||||||||||     
T  19891181 cccatctctaatcctgactatctccctccaccacgaagaacaacttcggcccccatcctccaaaccaccatctgccacaccatacctagccaccaacacc 19891280  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    | |  ||| | |||| | |||||||||||||  |||||||||||    
T  19891281 ctacgccacaaaccaaccctatcaactaacaatcgccaacacca 19891324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 599 - 722
Target Start/End: Complemental strand, 22734352 - 22734229
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 698  Q
    ||||||||||  | ||| ||||||||||  |||| |||||||||||||||||||||||| |||| | || |||||||||  | || |||||| | ||||     
T  22734352 ctaatcttcactatctctttccaccacatggaacaactccggcccccatcctccaacctaccatgcaccgcaccatatcgtgtcaacaacaccctataca 22734253  T
Q  699 aaataccacctctatcaactaaca 722  Q
    | | || ||||||||| |||||||    
T  22734252 acagactacctctatcgactaaca 22734229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 34332456 - 34332353
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||| ||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  34332456 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactcccgcccccatcctccaaacctccatccgccacaccatacctagccacta 34332357  T
Q  687 acac 690  Q
    ||||    
T  34332356 acac 34332353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 628 - 687
Target Start/End: Original strand, 46190032 - 46190091
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||| |||||||||||||| ||||||||| | || ||||||||||||| |||||||||||    
T  46190032 agaaacactccggcccccaacctccaaccgctcagcctcctcaccatacctcgccaccaa 46190091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 735
Target Start/End: Complemental strand, 48569680 - 48569532
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | |  | |||| || ||||| ||||||  || ||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  48569680 cctatcccatctctaatcctgactatctccctctaccacgaagaacagcttcggcccccatcctccaaaccaccatccgccacaccatacctagccacca 48569581  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    |||| | |  ||| |  ||| |||||||||||||||  |||||||||||    
T  48569580 acaccctacgccacaacccatctctatcaactaacaaccgccaacacca 48569532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 692
Target Start/End: Original strand, 14307753 - 14307812
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactc 692  Q
    ||||||||||||||  |||||| |||||  |||||||||||||||||||| |||| ||||    
T  14307753 cactccggcccccaaactccaatctccctgcctcctcaccatatctcgccgccaatactc 14307812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 654
Target Start/End: Original strand, 16179446 - 16179513
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaa 654  Q
    |||| ||||||||||||| ||| || ||||  ||||||  |||||| |||||||||||||||||||||    
T  16179446 cctatcccatctctaatcctcacaatctcccgccaccaagaagaacaactccggcccccatcctccaa 16179513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 661
Target Start/End: Complemental strand, 21740140 - 21740090
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  21740140 acctccctccaccaagaagaacaactccggcccccaacctccaacctccca 21740090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 36709441 - 36709483
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  36709441 ccaccacaaagaaacactccggccccccacctccaacctccca 36709483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 661
Target Start/End: Original strand, 45684707 - 45684749
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  45684707 ccaccacaaagaaacactccggccccccacctccaacctccca 45684749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 746
Target Start/End: Complemental strand, 40513319 - 40513206
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 732  Q
    |||||| ||||||| ||||||||| |||| ||  ||||||||| |  || ||||  || | |||||| | |||||||||||| || ||||| ||||||||    
T  40513319 cactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccaccaacatccgccaaca 40513220  T
Q  733 ccacttacccaaca 746  Q
    ||| ||||| ||||    
T  40513219 ccatttacctaaca 40513206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 585 - 746
Target Start/End: Original strand, 7098979 - 7099140
Alignment:
Q  585 cccctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 684  Q
    |||| |||||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |     
T  7098979 ccccaaccccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctat 7099078  T
Q  685 caacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||| || |||||||| | |||  ||| ||||||||||| || ||||||| |||| |||||||    
T  7099079 caaaacccgataccacaaaccctctcgatcaactaacaaactccaacacaactttcccaaca 7099140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 611 - 719
Target Start/End: Original strand, 9777893 - 9778001
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||||||| ||| | ||| |||||||| | |||||| |||| ||||     
T  9777893 acctccttccaccacaaagaaacactccggcccccaaccgtcaacctcccatcctcctcactataacgcgctaccaacaccctataccatatactacctt 9777992  T
Q  711 tatcaacta 719  Q
    |||||||||    
T  9777993 tatcaacta 9778001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 592 - 723
Target Start/End: Complemental strand, 29553376 - 29553245
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| ||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||||    |||||||||| |  |  || || |||    
T  29553376 cccatccctaatctgcctaacctcccgccaccacaaagaaccactccggcccccatcctccaacctcccacaaacctcaccataacgggtgactaaaact 29553277  T
Q  692 cgataccaaataccacctctatcaactaacat 723  Q
    | |||||||| |||||||||||| ||||||||    
T  29553276 ctataccaaaaaccacctctatccactaacat 29553245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 610 - 699
Target Start/End: Original strand, 40688588 - 40688677
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||||||  | |||||||| ||||||||    
T  40688588 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccatccctaacaccatatctaccaaccaacacccgatacca 40688677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 699
Target Start/End: Complemental strand, 19162795 - 19162706
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    |||||||||| || |||||||| | ||||||    
T  19162795 aacctccttccaccaaaaagaaccactccggcccccatcctccaacctcccgtccctaacaccatatctagcaaccaacaccctatacca 19162706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 746
Target Start/End: Original strand, 9690921 - 9691080
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    ||||| ||||| |||||||||   | |||| |||||||   |||| |||||||||||||| |||||||||||||| |||||||||||||||| || || |    
T  9690921 cctacaccatccctaatcttcgctatctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctacta 9691020  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
     ||| | ||||||||  |||| |||||| || ||||  | ||||||||| ||||||||||    
T  9691021 gcaccctataccaaaacccacatctatccaccaacaacctccaacaccatttacccaaca 9691080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 23642232 - 23642129
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  23642232 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 23642133  T
Q  687 acac 690  Q
    ||||    
T  23642132 acac 23642129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 23647890 - 23647787
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  23647890 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 23647791  T
Q  687 acac 690  Q
    ||||    
T  23647790 acac 23647787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 47419303 - 47419406
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  47419303 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 47419402  T
Q  687 acac 690  Q
    ||||    
T  47419403 acac 47419406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 587 - 741
Target Start/End: Original strand, 2072039 - 2072193
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||||||| || ||||||||||  | |||| |||||||  ||||| ||||||| |||||| |||| |||||||   ||||||||||||||||||||||||    
T  2072039 cctaccccgtccctaatcttcactaactccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccacca 2072138  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacc 741  Q
     ||| | |||||| || || |||||||| || |||||  |||| ||||| |||||    
T  2072139 gcaccctataccacatccctcctctatccaccaacatctgccatcaccatttacc 2072193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 611 - 672
Target Start/End: Original strand, 48805501 - 48805562
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcacc 672  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||    
T  48805501 acctccttccaccacaaagaaccactccggcacccaatctccaacctcccatccacctcacc 48805562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 723
Target Start/End: Original strand, 2365545 - 2365641
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 723  Q
    ||||||||||||| |||||||||| |||||||||  ||||||||||||| |  || |||||||| | |||||| | ||| |||||||||||||||||    
T  2365545 aagaaccactccgacccccatccttcaacctccctacctcctcaccataacgagcaaccaacaccctataccataaacctcctctatcaactaacat 2365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 307 - 377
Target Start/End: Original strand, 54684799 - 54684869
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaa 377  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaa 54684869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 735
Target Start/End: Complemental strand, 55725321 - 55725199
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 712  Q
    |||| |||||||  |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||||||||| | |||||| |  ||| |||||    
T  55725321 ctccctccaccaagaagaacaactccggcccccatcctccaaaccaccatcctccacaccatacctagccaccaacaccctataccataatccatctcta 55725222  T
Q  713 tcaactaacatacgccaacacca 735  Q
    || |||||||  | |||||||||    
T  55725221 tctactaacaacctccaacacca 55725199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 640 - 701
Target Start/End: Original strand, 38296258 - 38296319
Alignment:
Q  640 gcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 701  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||||| | ||||||||    
T  38296258 gcccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaa 38296319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 627 - 735
Target Start/End: Original strand, 8935613 - 8935721
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacg 726  Q
    |||||| ||||||||||||||||||||||||||||  | |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||||||| |     
T  8935613 aagaacaactccggcccccatcctccaacctcccacacacctcgccataacgagcgactaaaactctataccaaaaaccacccctatccactaacatcct 8935712  T
Q  727 ccaacacca 735  Q
    |||||||||    
T  8935713 ccaacacca 8935721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 628 - 684
Target Start/End: Original strand, 36183077 - 36183133
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 684  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||    
T  36183077 agaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccac 36183133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 5789733 - 5789630
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||||||| || ||||  ||||||  |||||| ||||||||||||||||||||| |  ||| ||||| ||||||| || ||||| |    
T  5789733 cctatcccatctctaatcttcacaatctcccgccaccaagaagaacaactccggcccccatcctccaaacctccaccctccacaccatacctagccacta 5789634  T
Q  687 acac 690  Q
    ||||    
T  5789633 acac 5789630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 19755766 - 19755869
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  19755766 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 19755865  T
Q  687 acac 690  Q
    ||||    
T  19755866 acac 19755869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 19784040 - 19783937
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || ||||| |    
T  19784040 cctatcccatctctaatcctcactatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacta 19783941  T
Q  687 acac 690  Q
    ||||    
T  19783940 acac 19783937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 613 - 690
Target Start/End: Original strand, 48312619 - 48312696
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||||||    
T  48312619 ctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacac 48312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 746
Target Start/End: Original strand, 54685140 - 54685268
Alignment:
Q  618 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaac 717  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||   | ||||||| || || ||||||||  ||||||| |  || | |||||||||    
T  54685140 tccaccaaatagaaccactctggcccccatcctccaacctcccatcacgcacaccatacctagcaaccaacacctgataccataaccctcttctatcaac 54685239  T
Q  718 taacatacgccaacaccacttacccaaca 746  Q
    ||| |  | ||||||||| || |||||||    
T  54685240 taataatctccaacaccatttccccaaca 54685268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 723
Target Start/End: Original strand, 23657800 - 23657932
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||| |||||| || | ||||||  ||||||  |||||| ||| ||||||||||||||||||||||||  | |||| | ||| |  || || || ||    
T  23657800 ccccatccctaatcctcctcacctcccgccaccaagaagaacaacttcggcccccatcctccaacctcccacacacctcgctataacgggcgactaaaac 23657899  T
Q  691 tcgataccaaataccacctctatcaactaacat 723  Q
    || |||||||| |||||| ||||| ||||||||    
T  23657900 tctataccaaaaaccacccctatccactaacat 23657932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 735
Target Start/End: Complemental strand, 54482800 - 54482652
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| | |  | |||| |||||||| |||||| |||||| |||||||||||||| |  |||||  || ||||||| || |||||||    
T  54482800 cctatcccatctctaatcctgactatctccctccaccacgaagaacaactccgacccccatcctccaaaccaccatctgccacaccatacctagccacca 54482701  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    |||| | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  54482700 acaccctacgccataacccctctctatcaactaacaaccgccaacacca 54482652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 1828181 - 1828078
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | ||||  ||||||  |||||| |||||||||||||||| |||| |  ||||||||| ||||||| || ||||| |    
T  1828181 cctatcccatctctaatcctcactatctcccgccaccaagaagaacaactccggcccccatccgccaaacctccatcctccacaccatacctagccacta 1828082  T
Q  687 acac 690  Q
    ||||    
T  1828081 acac 1828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 19163141 - 19163086
Alignment:
Q  294 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||| |||  ||||||||| ||||||||||||||||  |||||||||||||||    
T  19163141 aaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacatta 19163086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 40688256 - 40688299
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacattaa 350  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaa 40688299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 628 - 675
Target Start/End: Original strand, 41382513 - 41382560
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  41382513 agaaacactccggcccccaacctccaaccgcccagcctcctcaccata 41382560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 661
Target Start/End: Complemental strand, 49925904 - 49925834
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||| |||||||||   ||||||  ||||||  |||||| ||||||||||||| ||||||||||||||    
T  49925904 ccccatccctaatcttccccacctcccgccaccaagaagaacaactccggcccccaacctccaacctccca 49925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 52617460 - 52617406
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||||||||| | | ||||||||||| |  |||||||||||||||||||||||||    
T  52617460 cactccggcctctaacctccaacctctctgcctcctcaccatatctcgccaccaa 52617406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 682
Target Start/End: Complemental strand, 56337100 - 56337046
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgcc 682  Q
    |||| ||||||| |||||| ||||||||| |||| ||||||||||||| ||||||    
T  56337100 agaaacactccgacccccaacctccaaccgcccagcctcctcaccatacctcgcc 56337046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 611 - 660
Target Start/End: Complemental strand, 4524243 - 4524194
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    ||||||| ||||||  |||||| ||||||||||||| |||||||||||||    
T  4524243 acctcctgccaccaagaagaacaactccggcccccaacctccaacctccc 4524194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 687
Target Start/End: Complemental strand, 29328387 - 29328318
Alignment:
Q  619 ccaccacaaagaaccactccggcccc-catcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    |||||| ||||||||||||||||| | |  |||||||||||||  ||||||||||||| ||||| |||||    
T  29328387 ccaccaaaaagaaccactccggcctctccacctccaacctccccacctcctcaccatacctcgcgaccaa 29328318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  9 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggt 105  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 611 - 746
Target Start/End: Complemental strand, 22191399 - 22191264
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||| | |||||||||||| | |||||| |||| |||      
T  22191399 acctccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctataccacatactaccct 22191300  T
Q  711 tatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||||||| |  | ||||||||| ||||| ||||    
T  22191299 tatcaactaataacctccaacaccatttacctaaca 22191264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 592 - 746
Target Start/End: Complemental strand, 3544737 - 3544583
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||||| |||| |||     
T  3544737 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 3544638  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    | |||||||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  3544637 ctataccaaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 3544583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 590 - 741
Target Start/End: Complemental strand, 19014621 - 19014471
Alignment:
Q  590 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 689  Q
    |||||||| ||||||||||  | |||| |||||||  ||||| |||||||||||| | |||||||||||||   ||||||||||||||||||||||||||    
T  19014621 accccatccctaatcttcactatctccctccaccaagaagaaacactccggccccaa-cctccaacctccctgtctcctcaccatatctcgccaccaaca 19014523  T
Q  690 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacc 741  Q
    ||  ||||||||  |||||||| || || ||||| ||||||| ||| |||||    
T  19014522 cttaataccaaaacccacctctgtccaccaacatccgccaactccatttacc 19014471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 611 - 714
Target Start/End: Original strand, 3074268 - 3074371
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||||| | ||| |||||||| | |||||| |||| ||||     
T  3074268 acctccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctataccacatactacctt 3074367  T
Q  711 tatc 714  Q
    ||||    
T  3074368 tatc 3074371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 633 - 743
Target Start/End: Original strand, 28358435 - 28358545
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaaca 732  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| |  |||||||  || |||||||| || ||||  | ||||||    
T  28358435 cactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccctgtaccaaaacccgcctctatctaccaacaatctccaaca 28358534  T
Q  733 ccacttaccca 743  Q
    ||| |||||||    
T  28358535 ccatttaccca 28358545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 611 - 720
Target Start/End: Original strand, 21405360 - 21405469
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctc 710  Q
    ||||||||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||||||| |  || |||||||| | |||||| |||| |||      
T  21405360 acctccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctaccaacaccctataccacatactaccct 21405459  T
Q  711 tatcaactaa 720  Q
    ||||||||||    
T  21405460 tatcaactaa 21405469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 630 - 687
Target Start/End: Original strand, 45270783 - 45270840
Alignment:
Q  630 aaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  45270783 aaccactccggcccccaacctccaacctcccatcctcctcatcatatctcgccaccaa 45270840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 6051102 - 6051205
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  6051102 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 6051201  T
Q  687 acac 690  Q
    ||||    
T  6051202 acac 6051205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 746
Target Start/End: Complemental strand, 1248223 - 1248068
Alignment:
Q  590 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 689  Q
    |||||||| ||||||||||  || ||| |||||||  | |||  ||||| ||||| | |||||||||||||  |||||||||||||||||||||||||||    
T  1248223 accccatccctaatcttcactacttccctccaccaagatgaagtactccagccccta-cctccaacctccctacctcctcaccatatctcgccaccaaca 1248125  T
Q  690 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
      | |||||||| ||||||| |||| || || |||| ||||||| | ||||| ||||    
T  1248124 gcctataccaaaaaccacctttatccaccaatatacaccaacactatttacctaaca 1248068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 735
Target Start/End: Complemental strand, 25504631 - 25504487
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||| |||||||||  |||||||  ||||||  |||||| |||| |||||||| ||||||||||||||  | |||| ||||| |  || || || ||    
T  25504631 ccccatccctaatcttcccaacctcccgccaccaagaagaacaactctggcccccaacctccaacctcccacacacctcgccataacgggcgactaaaac 25504532  T
Q  691 tcgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    || |||||||| |||||| ||||| |||||||| | |||||||||    
T  25504531 tctataccaaaaaccacccctatccactaacatcctccaacacca 25504487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 30712830 - 30712759
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacatcctacactcctctaaaag 378  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||| ||||| ||||||||||||||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacatta-gtaagtaacaacctacactcctctaaaag 30712759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 735
Target Start/End: Original strand, 38070372 - 38070479
Alignment:
Q  628 agaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgc 727  Q
    |||| ||||||| |||||| ||||||||| |||| ||||||||||||| || |||||||| |||| |||||| |  || |||||||| || ||||  |||    
T  38070372 agaaacactccgacccccaacctccaaccgcccagcctcctcaccataccttgccaccaaaactctataccacaaccctcctctatccaccaacaaccgc 38070471  T
Q  728 caacacca 735  Q
    ||||||||    
T  38070472 caacacca 38070479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 587 - 653
Target Start/End: Original strand, 35541548 - 35541614
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 653  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||    
T  35541548 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctcca 35541614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 675
Target Start/End: Original strand, 5809080 - 5809168
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    ||||||||||| ||||||||||  || |||| |||| |  | ||| |||||||||||||| |||||||||||||| ||| | |||||||    
T  5809080 cctaccccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccata 5809168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 661
Target Start/End: Original strand, 39430782 - 39430850
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| ||||||||||||||    
T  39430782 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccca 39430850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 694 - 746
Target Start/End: Complemental strand, 43944012 - 43943960
Alignment:
Q  694 ataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||||| | |||| |||||||||||||||| | ||||||||||||||||||||    
T  43944012 ataccacaaaccatctctatcaactaacatcctccaacaccacttacccaaca 43943960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 746
Target Start/End: Complemental strand, 13867442 - 13867315
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 718  Q
    ||||||| | ||| |||||| ||||||| ||||||||| |||| ||  ||||||||| |  || ||||  || | |||||| | |||||||||||| ||     
T  13867442 ccaccacgatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccctataccataaaccacctctatccacc 13867343  T
Q  719 aacatacgccaacaccacttacccaaca 746  Q
    ||||| ||||||||||| ||||| ||||    
T  13867342 aacatccgccaacaccatttacctaaca 13867315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 699
Target Start/End: Complemental strand, 40563150 - 40563087
Alignment:
Q  636 tccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||| ||||||||||| |  |||| || ||||||||||||||||| |||| ||||||    
T  40563150 tccggcccccaacctccaacctctctgcctcatctccatatctcgccaccaaaactctatacca 40563087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 660
Target Start/End: Complemental strand, 49264599 - 49264532
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||||    
T  49264599 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 49264532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 349
Target Start/End: Original strand, 9991241 - 9991292
Alignment:
Q  302 ggtaaccactgccaaacatca----taagaaagagcctgcaaagaaacatta 349  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||    
T  9991241 ggtaaccactgccaaacatcataattaagaaagaggctgcaaagaaacatta 9991292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 47622713 - 47622615
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||||||||| |||  | |||  |||||||  |||||| ||||||||||| ||||||||| |  |||||| || ||||||| || |||||||||||    
T  47622713 cccatctctaatcctcactatctctctccaccaagaagaacaactccggcccctatcctccaaacctccatccaccacaccatacctagccaccaacac 47622615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 699
Target Start/End: Original strand, 52691996 - 52692082
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||| |||||||  ||||| ||||||| ||| |  || ||||||||||| ||||||||||||| | |||||||||||| | ||||||    
T  52691996 ctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctatacca 52692082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 658
Target Start/End: Original strand, 20796173 - 20796238
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctc 658  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||    
T  20796173 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctc 20796238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 590 - 712
Target Start/End: Complemental strand, 42039343 - 42039221
Alignment:
Q  590 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 689  Q
    |||||||| ||||||||||| | |||| |||||||  || || |||||||||||||||||||||||| |||| || ||||||||||| ||||||||||||    
T  42039343 accccatccctaatcttcattaactccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaaca 42039244  T
Q  690 ctcgataccaaataccacctcta 712  Q
    | | ||||||||  |||||||||    
T  42039243 ccctataccaaaacccacctcta 42039221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 599 - 746
Target Start/End: Original strand, 476724 - 476871
Alignment:
Q  599 ctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacc 698  Q
    ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  ||||||||||||||||||| |||| ||| | |||||    
T  476724 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacc 476823  T
Q  699 aaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||| |||| ||||||| || ||||| ||||||||||| ||||| ||||    
T  476824 aaaaaccatctctatctaccaacattcgccaacaccatttacctaaca 476871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 590 - 746
Target Start/End: Original strand, 42259782 - 42259938
Alignment:
Q  590 accccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaaca 689  Q
    |||||||| ||||||||||  |||||| |||||||  ||||| ||||||||| |||| ||||||| |||||| || |||||| ||||||| |||| ||||    
T  42259782 accccatccctaatcttcactacctccctccaccaagaagaagcactccggctcccaacctccaaactcccagccacctcacgatatctctccacaaaca 42259881  T
Q  690 ctcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |   ||||||||  ||||||||||| || ||||| || |||||||| ||||| ||||    
T  42259882 ccttataccaaaacccacctctatccaccaacatccgtcaacaccatttacctaaca 42259938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 35983432 - 35983329
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| |||||||||| || |||||||    
T  35983432 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaacctccatccgcctcaccatacctagccacca 35983333  T
Q  687 acac 690  Q
    ||||    
T  35983332 acac 35983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 42514219 - 42514322
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| || ||||||||| ||||||| || ||||| |    
T  42514219 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaactgccatcctccacaccatacctagccacta 42514318  T
Q  687 acac 690  Q
    ||||    
T  42514319 acac 42514322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 675
Target Start/End: Original strand, 27325286 - 27325351
Alignment:
Q  610 aacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||    
T  27325286 aacctccctccaccacaaagaacccctccggtccccatcctccaacctcccatactcctcaccata 27325351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 568 - 664
Target Start/End: Original strand, 36256255 - 36256354
Alignment:
Q  568 aaaccaaccaacaccgccccctacc---ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 664  Q
    |||||||||||||||||||||  ||   || ||||||||| |   |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  36256255 aaaccaaccaacaccgcccccaccctccccttctctaatcctaccaacctctttccaccaaaaagaaccactccggcccccatcctccaacctcccatcc 36256354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 627 - 699
Target Start/End: Original strand, 41590635 - 41590707
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  41590635 aagaacctctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 746
Target Start/End: Complemental strand, 8299823 - 8299664
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||| ||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||| |  ||||||||| | ||||| || |||| ||    
T  8299823 cctatcccatctttaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctccaaaccaccatcctccacgccatacctagccaaca 8299724  T
Q  687 acactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    |||| | |  ||| | ||| || |||||||||||||  | ||||||||| || |||||||    
T  8299723 acaccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaaca 8299664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 614 - 735
Target Start/End: Original strand, 380427 - 380548
Alignment:
Q  614 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctat 713  Q
    |||||| ||||  |||||||||||||||||||| |||||||||||||  ||||||||||||| | |||  ||| ||| | |||||| | |||| ||||||    
T  380427 tccttctaccaagaagaaccactccggcccccaacctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaaccatctctat 380526  T
Q  714 caactaacatacgccaacacca 735  Q
    | || ||||| |||||||||||    
T  380527 ccaccaacatccgccaacacca 380548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 627 - 699
Target Start/End: Complemental strand, 4297910 - 4297838
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||| |||||| ||||| || ||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  4297910 aagaacctctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 4297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 587 - 653
Target Start/End: Complemental strand, 25857065 - 25856999
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 653  Q
    |||| ||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||    
T  25857065 cctatcccatctctaatcctcacaatctccctccaccacaaagaacaactccggcccccatcctcca 25856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 684
Target Start/End: Complemental strand, 30731955 - 30731858
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 684  Q
    |||| ||||||||||||| ||| || |||| |||||||  |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || |||||    
T  30731955 cctatcccatctctaatcctcacaatctccctccaccatgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccac 30731858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 675
Target Start/End: Original strand, 12825698 - 12825786
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| |||| | |||||||||||||| || ||||||||| |||||||    
T  12825698 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactctgacccccatcctccaaactgccatcctccacaccata 12825786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 611 - 675
Target Start/End: Complemental strand, 26263048 - 26262984
Alignment:
Q  611 acctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||||| ||||||| ||||| ||||||||||||||| || ||||||| |||||||||||||||||    
T  26263048 acctccctccaccaaaaagacccactccggcccccacccaccaaccttccatcctcctcaccata 26262984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 619 - 738
Target Start/End: Complemental strand, 22094859 - 22094740
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 718  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||    |||| ||||| |  || || || |||| |||||||| |||||| ||||| |||    
T  22094859 ccaccacgaagaacaacttcggcccccatcctccaacctcccacaaacctcgccataacgagcgactaaaactctataccaaaaaccacccctatccact 22094760  T
Q  719 aacatacgccaacaccactt 738  Q
    ||||| | ||||||||||||    
T  22094759 aacatcctccaacaccactt 22094740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 27116814 - 27116711
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| | ||||| || ||||| |    
T  27116814 cctatcccatctctaatcctcacgatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacgccatacctagccacta 27116715  T
Q  687 acac 690  Q
    ||||    
T  27116714 acac 27116711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 28535316 - 28535213
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || ||||||| || |||||||    
T  28535316 cctatcccatctctaatcctcactatctccctccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatacctagccacca 28535217  T
Q  687 acac 690  Q
    ||||    
T  28535216 acac 28535213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 31642010 - 31642113
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | ||||  ||||||  |||||| ||||||||||||||||||||| |  |||||| || |||||||||| |||||||    
T  31642010 cctatcccatctctaatcctcactatctcccgccaccatgaagaacaactccggcccccatcctccaaacctccatccgccacaccatatctagccacca 31642109  T
Q  687 acac 690  Q
    ||||    
T  31642110 acac 31642113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 32239704 - 32239760
Alignment:
Q  44 gagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaa 100  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaa 32239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 738
Target Start/End: Complemental strand, 20208356 - 20208210
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    ||||||||||||||| |   |||||| ||||||| || |||| ||||||||||||| |||||||||||||| |  | || ||||| |  || || || ||    
T  20208356 ccccatctctaatctaccccacctccctccaccaaaacgaacaactccggcccccaacctccaacctcccacctacttcgccata-cgggcgactaagac 20208258  T
Q  691 tcgataccaaataccacctctatcaactaacatacgccaacaccactt 738  Q
    ||||||||||| |||||  ||||| |||| ||| | ||||||||||||    
T  20208257 tcgataccaaaaaccactcctatctactagcatcctccaacaccactt 20208210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 735
Target Start/End: Original strand, 27795988 - 27796131
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    ||||||||||||||| |    |||| |||||||| |||||| |||| |||||||||||||||| |  |||||| || ||||||| || |||||||||||     
T  27795988 cccatctctaatcttgacttactccctccaccacgaagaacaactctggcccccatcctccaaaccaccatccgccacaccatacctagccaccaacacc 27796087  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacacca 735  Q
    | |  ||| |  ||  |||||||||||||||  |||||||||||    
T  27796088 ctacgccataacccctctctatcaactaacaaccgccaacacca 27796131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 36255968 - 36256010
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacatta 36256010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 678
Target Start/End: Complemental strand, 22176440 - 22176376
Alignment:
Q  614 tccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatct 678  Q
    |||||||||||  ||||  |||||||||||||| || ||||||||||  ||||||||||||||||    
T  22176440 tccttccaccaagaagagacactccggcccccaaccgccaacctccctgcctcctcaccatatct 22176376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 690
Target Start/End: Original strand, 42928661 - 42928733
Alignment:
Q  618 tccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacac 690  Q
    |||||||| |||||| ||||||||||||||||||||| |  |||||| || || |||| || |||||||||||    
T  42928661 tccaccacgaagaacaactccggcccccatcctccaaacctccatccgccacatcatacctagccaccaacac 42928733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 690
Target Start/End: Original strand, 23238882 - 23238985
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| |||  | |||| |||||||| | |||| ||||||||||||| ||||||| |  |||||| || ||||||| || ||||| |    
T  23238882 cctatcccatctctaatcctcactatctccctccaccacgacgaacaactccggcccccaacctccaaacctccatccgccacaccatacctagccacta 23238981  T
Q  687 acac 690  Q
    ||||    
T  23238982 acac 23238985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 624 - 746
Target Start/End: Original strand, 10780737 - 10780859
Alignment:
Q  624 acaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacat 723  Q
    ||||||| | ||||||||||||||||||||| |  |||||| || | ||||| || |||| |||||| | |  ||| | ||| || |||||||||||||     
T  10780737 acaaagagcaactccggcccccatcctccaaaccaccatccgccactccatacctagccaacaacaccctactccacaaacctcccctatcaactaacag 10780836  T
Q  724 acgccaacaccacttacccaaca 746  Q
     ||||||||||| || |||||||    
T  10780837 ccgccaacaccatttccccaaca 10780859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 648 - 746
Target Start/End: Original strand, 18896109 - 18896207
Alignment:
Q  648 cctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaactaacatacgccaacaccacttacccaaca 746  Q
    ||||||||||||||||| |||||| ||| |||||  ||||||  | |||||| |  || ||||||||||| ||||  | ||||||||||||||| ||||    
T  18896109 cctccaacctcccatccacctcacgatacctcgctgccaacatcctataccacaaccctcctctatcaaccaacaatctccaacaccacttacctaaca 18896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 587 - 653
Target Start/End: Complemental strand, 27165591 - 27165525
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctcca 653  Q
    |||| ||||||||||||| |||| | |||| |||||||  |||||| ||| ||||||||||||||||    
T  27165591 cctatcccatctctaatcctcattatctccctccaccaagaagaacaacttcggcccccatcctcca 27165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 587 - 704
Target Start/End: Complemental strand, 86842 - 86725
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| |||||| ||||| |||| |||||||||||||||   | |||||||| | |||||||||||||||||||||  ||||||||||||||| || ||||    
T  86842 cctatcccatccctaattttcacaacctccttccaccaattacaaccactctgacccccatcctccaacctcccacactcctcaccatatctagcaacca 86743  T
Q  687 acactcgataccaaatac 704  Q
    ||||||||||||| ||||    
T  86742 acactcgataccacatac 86725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 87186 - 87113
Alignment:
Q  274 acgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacat 347  Q
    |||||| |||||| | || | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  87186 acgaaccgagtaacctccagcaggatccggtaaccactgccaaacatcataagaaagaggctgcaaagaaacat 87113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 627 - 699
Target Start/End: Original strand, 43310798 - 43310870
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  43310798 aagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctatacca 43310870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 630 - 699
Target Start/End: Original strand, 26146757 - 26146826
Alignment:
Q  630 aaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||    
T  26146757 aaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctatacca 26146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 568 - 699
Target Start/End: Original strand, 13416148 - 13416282
Alignment:
Q  568 aaaccaaccaacaccgccccctacc---ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcc 664  Q
    |||||| ||||||||||||||  ||   || ||||||||| |  |||||||||||||||| | ||||||||||||||||||||||||||||||||||||     
T  13416148 aaaccagccaacaccgcccccaccctgcccttctctaatcctactaacctccttccaccaaatagaaccactccggcccccatcctccaacctcccatca 13416247  T
Q  665 tcctcaccatatctcgccaccaacactcgatacca 699  Q
      | ||||||| || || |||||||| ||||||||    
T  13416248 cgcacaccatacctagcaaccaacacccgatacca 13416282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 619 - 735
Target Start/End: Original strand, 37445624 - 37445740
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 718  Q
    ||||||| |||||| ||||||||||||||||||||||||||  |||||| ||||||| || ||||||||||| | |  ||| |  ||| | |||||||||    
T  37445624 ccaccacgaagaacaactccggcccccatcctccaacctcctgtcctccgcaccatacctagccaccaacaccctacgccagaacccatcactatcaact 37445723  T
Q  719 aacatacgccaacacca 735  Q
    |||| ||||||||||||    
T  37445724 aacagacgccaacacca 37445740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 613 - 735
Target Start/End: Original strand, 14440269 - 14440391
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 712  Q
    |||| |||||||| |||||| ||||||||||||||||||||| |  |||||| ||  |||||| || |||| |||||| | | |||| | |||||| |||    
T  14440269 ctccctccaccacgaagaacaactccggcccccatcctccaaaccaccatccgccataccatacctagccaacaacaccctacaccacaaaccaccccta 14440368  T
Q  713 tcaactaacatacgccaacacca 735  Q
    |||||||||| ||||||||||||    
T  14440369 tcaactaacaaacgccaacacca 14440391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 597 - 660
Target Start/End: Complemental strand, 2207453 - 2207390
Alignment:
Q  597 ctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    |||||||| ||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  2207453 ctctaatcctcccaacctccttccaccaaaaagaaccaccccggcccccatcctccaacctccc 2207390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 663
Target Start/End: Complemental strand, 6727393 - 6727343
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatc 663  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  6727393 ctccttccaccaaatagaaccactccggcccccatcctccaacctcccatc 6727343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 593 - 687
Target Start/End: Original strand, 6823916 - 6824010
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaa 687  Q
    ||||| |||||||||   |||||||||||||||   ||| |||||||||||||| |||||||||||||  |||||||| ||||||||||| ||||    
T  6823916 ccatccctaatcttcgctacctccttccaccacggtgaaacactccggcccccaacctccaacctccctgcctcctcaacatatctcgccgccaa 6824010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 423 - 741
Target Start/End: Complemental strand, 44029021 - 44028707
Alignment:
Q  423 aacatatcttttaccattatagatttattaagcgctaagccatatagcctaccaaaccgctccctaaagggaacctgaccacaccaccgatcatgccaaa 522  Q
    ||||| ||||| ||| |||| |||||||| |  |||||  || ||| ||||| ||| |||||||| || | ||| | |||||||||||||||||||||||    
T  44029021 aacatgtctttaaccgttattgatttattcaaggctaaatcaaataacctactaaagcgctccctcaaagcaacatcaccacaccaccgatcatgccaaa 44028922  T
Q  523 aaagtgtagactccccatc-cccacacgacgcgctacacactcattaaaccaaccaa---caccgccccctaccccatctctaatcttcataacctcctt 618  Q
    |||| || | ||||||||| |||| |||   | | ||||  ||   ||||||||||    ||||||||| || |||||| |||||||||| |||||||      
T  44028921 aaagagtgg-ctccccatcacccatacgcgacaccacactttcccaaaaccaaccattatcaccgccccatatcccatccctaatcttcacaacctccgc 44028823  T
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctctatcaact 718  Q
    |||| ||  | |||||||||| ||||||       ||||||| ||||||||||||||||||||| | ||||| || ||||| |  ||| ||||||| |||    
T  44028822 ccacaacgtaaaaccactccgaccccca-------acctcccgtcctcctcaccatatctcgccgcaaacacacggtaccacaacccatctctatccact 44028730  T
Q  719 aacatacgccaacaccacttacc 741  Q
    ||||| | ||| |||||||||||    
T  44028729 aacatcctccagcaccacttacc 44028707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 591 - 660
Target Start/End: Complemental strand, 22725076 - 22725007
Alignment:
Q  591 ccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    ||||||||| |||| ||| ||||| |  ||||||| |||||| |||||||||||||||||||||||||||    
T  22725076 ccccatctcaaatcctcacaaccttccgccaccacgaagaacaactccggcccccatcctccaacctccc 22725007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 699
Target Start/End: Original strand, 10689094 - 10689165
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||||||||||| | |||||||||||| | |||| |||||||||||| |||||||||| | ||||||    
T  10689094 aagaaccactccggccccaa-cctccaacctcctagcctcatcaccatatctcaccaccaacaccctatacca 10689165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 6727728 - 6727686
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||||| |||||||||||||||| ||||||||||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacatta 6727686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Complemental strand, 44029159 - 44029082
Alignment:
Q  305 aaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcc 382  Q
    |||||||||||||||||| ||||||||| |||||| ||||||| |   | ||| | |||||||||| |||||||||||    
T  44029159 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacactccgctaaaagatcc 44029082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 379
Target Start/End: Original strand, 1468185 - 1468257
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaaga 379  Q
    |||||| || |||||||||||||||| ||||||||||||||||   | ||| | |||||||||||||| ||||    
T  1468185 ccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctctataaga 1468257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 660
Target Start/End: Complemental strand, 9668641 - 9668574
Alignment:
Q  593 ccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctccc 660  Q
    |||||||||||| ||   |||||| |||||||  |||||| ||||||||||||| |||||||||||||    
T  9668641 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccc 9668574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 675
Target Start/End: Original strand, 28253224 - 28253307
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    ||||||||||||| |||  | |||| |||||||  |||||| ||||||||||||||||||||| |  |||||| || |||||||    
T  28253224 cccatctctaatcctcactatctccctccaccaagaagaacaactccggcccccatcctccaaacctccatccgccacaccata 28253307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 675
Target Start/End: Original strand, 32191609 - 32191652
Alignment:
Q  632 ccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||||||||||||||||||||||||||||  |||| ||||||||    
T  32191609 ccactccggcccccatcctccaacctccctacctcatcaccata 32191652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 2207773 - 2207731
Alignment:
Q  307 ccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacatta 2207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 661
Target Start/End: Complemental strand, 28400159 - 28400117
Alignment:
Q  619 ccaccacaaagaaccactccggcccccatcctccaacctccca 661  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  28400159 ccaccacaaagaaacactccggccccccacctccaacctccca 28400117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 735
Target Start/End: Complemental strand, 33515822 - 33515700
Alignment:
Q  613 ctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaataccacctcta 712  Q
    |||| |||||||| ||||||  ||||| |||||||||||||| |  |||||| || ||||||| || ||||||||||| | |  ||| |  ||| |||||    
T  33515822 ctccctccaccacgaagaacagctccgacccccatcctccaaaccaccatccgccacaccatacctagccaccaacaccctacgccacaacccatctcta 33515723  T
Q  713 tcaactaacatacgccaacacca 735  Q
    ||||||||||  || ||||||||    
T  33515722 tcaactaacaaccgtcaacacca 33515700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 44029313 - 44029252
Alignment:
Q  152 cgatcacagagcagtcgccacacaaaaattgacacc-ttaagaggaacctgattatgccaaa 212  Q
    |||||||||| ||||| ||| ||||||||||||||| ||| | |||||||| ||||||||||    
T  44029313 cgatcacagatcagtctccaaacaaaaattgacacctttagggggaacctgtttatgccaaa 44029252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 587 - 690
Target Start/End: Complemental strand, 105484 - 105381
Alignment:
Q  587 cctaccccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccacca 686  Q
    |||| ||||||||||||| ||| || |||| |||||||| |||||| ||||||||||||||||||||| |  ||||||||| ||||||| || ||||| |    
T  105484 cctatcccatctctaatcctcacaatctccctccaccacgaagaacaactccggcccccatcctccaaaccgccatcctccacaccatacctagccacta 105385  T
Q  687 acac 690  Q
    ||||    
T  105384 acac 105381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 633 - 699
Target Start/End: Original strand, 55207 - 55273
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  55207 cactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 55273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 734
Target Start/End: Complemental strand, 34245 - 34103
Alignment:
Q  592 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacact 691  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||   |||||||||||||||||| |||| |||     
T  34245 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgtctcctcaccatatctcgctaccagcacc 34146  T
Q  692 cgataccaaataccacctctatcaactaacatacgccaacacc 734  Q
    | |||||||| |||| |||| || || ||||| ||||||||||    
T  34145 ctataccaaaaaccatctctctctaccaacattcgccaacacc 34103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 633 - 699
Target Start/End: Complemental strand, 143427 - 143361
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| | ||||||    
T  143427 cactccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctatacca 143361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 12956 - 12901
Alignment:
Q  294 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 349  Q
    ||||||| |||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  12956 aaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 12901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 633 - 684
Target Start/End: Original strand, 6633 - 6684
Alignment:
Q  633 cactccggcccccatcctccaacctcccatcctcctcaccatatctcgccac 684  Q
    |||||| ||||||| |||||||||||||  ||||||||||||||||||||||    
T  6633 cactccagcccccaacctccaacctccctgcctcctcaccatatctcgccac 6684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 701
Target Start/End: Complemental strand, 63876 - 63826
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgataccaaa 701  Q
    ||||||||||  |||||||| ||||||||||||||||||||| ||||||||    
T  63876 ccaacctccctgcctcctcatcatatctcgccaccaacactctataccaaa 63826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 67619 - 67667
Alignment:
Q  627 aagaaccactccggcccccatcctccaacctcccatcctcctcaccata 675  Q
    |||||||||||| ||||||| |||||||||||||  |||||||||||||    
T  67619 aagaaccactccagcccccaacctccaacctccctgcctcctcaccata 67667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 699
Target Start/End: Original strand, 28337 - 28385
Alignment:
Q  651 ccaacctcccatcctcctcaccatatctcgccaccaacactcgatacca 699  Q
    ||||||||||||||||||| |||||||| ||||||||||| | ||||||    
T  28337 ccaacctcccatcctcctcgccatatcttgccaccaacaccctatacca 28385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University