View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1076_high_4 (Length: 284)

Name: NF1076_high_4
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1076_high_4
NF1076_high_4
[»] chr6 (10 HSPs)
chr6 (29-255)||(2972444-2972672)
chr6 (16-203)||(2997790-2997977)
chr6 (16-255)||(2934042-2934284)
chr6 (16-253)||(2951387-2951627)
chr6 (20-217)||(2963966-2964169)
chr6 (23-242)||(2659403-2659622)
chr6 (16-236)||(2982331-2982557)
chr6 (16-230)||(2926631-2926845)
chr6 (16-255)||(3004174-3004413)
chr6 (127-255)||(2929329-2929460)
[»] chr7 (2 HSPs)
chr7 (16-255)||(3338624-3338866)
chr7 (20-76)||(20012216-20012272)
[»] scaffold0024 (1 HSPs)
scaffold0024 (23-229)||(35627-35833)
[»] chr3 (1 HSPs)
chr3 (23-154)||(49612956-49613093)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 2972672 - 2972444
Alignment:
Q  29 tttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttgggagtg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||| ||||||||||||    
T  2972672 tttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggtttgaacgtggtgaaaggggccaatggaaacgactttgggagtg 2972573  T
Q  129 tat--gcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat 226  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2972572 tatatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat 2972473  T
Q  227 atccaccaagcaggagagtgacatcttga 255  Q
    |||||||||||||||||||||||||||||    
T  2972472 atccaccaagcaggagagtgacatcttga 2972444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 2997790 - 2997977
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  2997790 atgcctcagttcgttggagaaaagctttgaagtgaatgagtttctgaggttccatgttttggagctgtggatgaccatggtgaaaggggccaatggaaac 2997889  T
Q  116 aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctct 203  Q
     ||  |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2997890 gacagtgggggtgtatgcgtctgcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctct 2997977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 2934284 - 2934042
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    |||||| ||||| || ||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934284 atgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 2934185  T
Q  116 aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagc 215  Q
     ||  |||| |||||||| |||| |||| || |||||||   | | |||||||| ||||||||||||||| |||||||||||| |||| || ||||||||    
T  2934184 gacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataagggaccttatagatgcaacagtcatcggttgaaggtgactctgctttgtcgagc 2934085  T
Q  216 atcacattgatatc---caccaagcaggagagtgacatcttga 255  Q
    ||  ||||||||||    ||||||| |||||||||||| ||||    
T  2934084 atggcattgatatcaataaccaagctggagagtgacatattga 2934042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 2951627 - 2951387
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    |||||| ||||| || ||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2951627 atgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctgggggtgaccatggtgaaaggggccaatggaaac 2951528  T
Q  116 aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagc 215  Q
     || ||||| |||||||| |||| |||| |  |||||||   | |||||||||||||||||||||| ||| | ||||||||||| | | |||||| ||||    
T  2951527 gaccttgggggtgtatgcgtctttgttgtgcctgcgaataacataggggaccttgtagatgcaacactcatctgttgaaggtggatgtgctgtgtggagc 2951428  T
Q  216 atcacattgatatc---caccaagcaggagagtgacatctt 253  Q
    ||| ||||||||||   |||||||||||||  |||||||||    
T  2951427 atcgcattgatatcattcaccaagcaggaggatgacatctt 2951387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 2964169 - 2963966
Alignment:
Q  20 ctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtg------accgtggtgaaaggggccaatggaa 113  Q
    ||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||      |||||||||||||||||| ||||||    
T  2964169 ctcggttcgttggagaaaatctttgaagtaaatgagtttttgtcgttccatgttttggatctgggggtgggggtgaccgtggtgaaaggggccgatggaa 2964070  T
Q  114 acaactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcga 213  Q
    || |  ||||| |||||||| | |||||||||| ||||||| | |||||||||||||||||||||||| |||  |||||||||||||||| |||||||||    
T  2964069 acgaacttgggggtgtatgcgttttcgttgagtgtgcgaatatcagaggggaccttgtagatgcaacaatcataggttgaaggtggctctgctgtgtcga 2963970  T
Q  214 gcat 217  Q
    ||||    
T  2963969 gcat 2963966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 2659403 - 2659622
Alignment:
Q  23 ggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttg 122  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |   ||    
T  2659403 ggttcgttggagaaaagctttcaagtaaatgagtttgtgacgttccatgttttggagctgggggtgatcatggtgaaaggggccaatggaaacgagagtg 2659502  T
Q  123 ggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacat 222  Q
    || |||||||| | |||||||||| |||||||   ||||||||||||||||||||||    || |  ||||   ||||||| |  ||||||||| | |||    
T  2659503 ggggtgtatgctttttcgttgagtgtgcgaatagcagaggggaccttgtagatgcaaacaccaaccattgagaatggctctgcgctgtcgagcaacgcat 2659602  T
Q  223 tgatatccaccaagcaggag 242  Q
    ||||||||||||||||||||    
T  2659603 tgatatccaccaagcaggag 2659622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2982557 - 2982331
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctggggg------tgaccgtggtgaaaggggccaat 109  Q
    |||||||||||||||  |||||||||||||||| |||||| || |||||||||||||||||||| ||| ||      |||||||||||||||||||||||    
T  2982557 atgcctcggttcgttgaagaaaagctttgaagtgaatgagcttctgacgttccatgttttggagatggaggcctaggtgaccgtggtgaaaggggccaat 2982458  T
Q  110 ggaaacaactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtg 209  Q
    |||||| || ||||| |||||||| | |||||||| | |||||||   ||||||||||||||||||||||| |||   ||||| |||||||||| |  ||    
T  2982457 ggaaacgacattgggggtgtatgcgttttcgttgactgtgcgaataacagaggggaccttgtagatgcaacggtccttggttggaggtggctctgcgctg 2982358  T
Q  210 tcgagcatcacattgatatccaccaag 236  Q
    ||||||||| |||||||||||||||||    
T  2982357 tcgagcatcgcattgatatccaccaag 2982331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 2926845 - 2926631
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    |||||| ||||| || ||||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2926845 atgccttggttctttggagaaaatccttgaagtaaatgagtttctgactttccatgttttggagctggggttgaccgtggtgaaaggggccaatagaaac 2926746  T
Q  116 aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagc 215  Q
     || ||||| |||||||| |||| |||| || |||||||   | |||||||||| ||||| ||||||||| |||||||||||| |||| |||||| ||||    
T  2926745 gaccttgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttatagatacaacagtcatcggttgaaggtgactctgctgtgttgagc 2926646  T
Q  216 atcacattgatatcc 230  Q
    ||   ||||||||||    
T  2926645 atggaattgatatcc 2926631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 3004174 - 3004413
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    |||||| ||||| || ||||||| | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004174 atgccttggttctttggagaaaatccttgaagtaaatgagtttctgattttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 3004273  T
Q  116 aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagc 215  Q
     ||  |||| |||||||| |||| |||| || |||||||   | |||||||||||||||||||||| | | ||   |||||||||||  |||||| ||||    
T  3004274 gacagtgggggtgtatgcgtctttgttgtgtctgcgaataacataggggaccttgtagatgcaacacttatcg---gaaggtggctcggctgtgttgagc 3004370  T
Q  216 atcacattgat---atccaccaagcaggagagtgacatcttga 255  Q
    ||  |||||||   ||||||||||| ||||| |||||| ||||    
T  3004371 atggcattgatatcatccaccaagctggagaatgacatattga 3004413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 2929460 - 2929329
Alignment:
Q  127 tgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacattgat 226  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| ||||||  |||||||    
T  2929460 tgtatgcgtcttcgttgagtttgcgaattttagagggaaccttgtagatgcaacagtcatcagttgaaggtggctctgctgtgttgagcatggcattgat 2929361  T
Q  227 ---atccaccaagcaggagagtgacatcttga 255  Q
       ||||||||||| ||||  |||||||||||    
T  2929360 atcatccaccaagcgggaggatgacatcttga 2929329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 3338866 - 3338624
Alignment:
Q  16 atgcctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaac 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||  |||  | |||||||||||||||||||||||||||    
T  3338866 atgcctcggttcgttggagaaaagctttgaagtaaatgagtttgtgacgttccatgttttagagtcgggttttaccgtggtgaaaggggccaatggaaac 3338767  T
Q  116 -aactttgggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgag 214  Q
     ||||| ||| |||||||| ||||| ||| ||||||||||   |||||| || |||||||||||||||||| |||||||||||||||||  |||||||||    
T  3338766 gaacttaggg-gtgtatgcgtcttcattgtgtttgcgaataacagagggtactttgtagatgcaacagtcatcggttgaaggtggctctgatgtgtcgag 3338668  T
Q  215 catcacattgat---atccaccaagcaggagagtgacatcttga 255  Q
    |||| |||||||   ||||||||||| ||||  |||||||||||    
T  3338667 catcgcattgatatcatccaccaagcgggaggatgacatcttga 3338624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 20012272 - 20012216
Alignment:
Q  20 ctcggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttg 76  Q
    ||||| ||||| |||||| |||||||||||| |||||||||||| ||||||||||||    
T  20012272 ctcggatcgttggagaaatgctttgaagtaactgagtttgtgacattccatgttttg 20012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 35627 - 35833
Alignment:
Q  23 ggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttggagctgggggtgaccgtggtgaaaggggccaatggaaacaactttg 122  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||     
T  35627 ggttcgttggagaaaatctttgaagtaaatgagtttgtgacgttccatgtttttgagctgggggtgaccgtggtgaaaggggccaatggaaacgaaatta 35726  T
Q  123 ggagtgtatgcctcttcgttgagtttgcgaattttagaggggaccttgtagatgcaacagtcaccggttgaaggtggctcttctgtgtcgagcatcacat 222  Q
    || |||||||| ||||| ||| ||||||||||   |||||||||||||||||||||||  | | ||||||||||||  ||| |||||| |||||||||||    
T  35727 ggggtgtatgcgtcttcattgtgtttgcgaataacagaggggaccttgtagatgcaacgattatcggttgaaggtgcatctgctgtgtggagcatcacat 35826  T
Q  223 tgatatc 229  Q
    | |||||    
T  35827 tcatatc 35833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 49613093 - 49612956
Alignment:
Q  23 ggttcgtttgagaaaagctttgaagtaaatgagtttgtgacgttccatgttttgga------gctgggggtgaccgtggtgaaaggggccaatggaaaca 116  Q
    |||||||| |||||||||||||||||||||||||||||| || |||||||||||||      | ||| |||||| |||||| || |||||||||||||      
T  49613093 ggttcgttggagaaaagctttgaagtaaatgagtttgtggcgctccatgttttggaggtggtggtggcggtgactgtggtggaaagggccaatggaaatg 49612994  T
Q  117 actttgggagtgtatgcctcttcgttgagtttgcgaat 154  Q
    |||||||| |||||||| |||  ||||||  |||||||    
T  49612993 actttgggggtgtatgcgtctgggttgagactgcgaat 49612956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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