View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1076_low_11 (Length: 280)

Name: NF1076_low_11
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1076_low_11
NF1076_low_11
[»] chr5 (4 HSPs)
chr5 (10-254)||(43061561-43061808)
chr5 (205-254)||(36474952-36475001)
chr5 (211-253)||(28745229-28745271)
chr5 (205-253)||(36465587-36465635)
[»] chr1 (4 HSPs)
chr1 (123-254)||(8445564-8445695)
chr1 (136-254)||(8442864-8442982)
chr1 (203-254)||(27512802-27512853)
chr1 (136-254)||(8440966-8441084)
[»] chr4 (2 HSPs)
chr4 (203-256)||(920976-921029)
chr4 (210-254)||(9317607-9317651)
[»] chr3 (2 HSPs)
chr3 (210-254)||(54383590-54383634)
chr3 (213-254)||(4816698-4816739)
[»] chr8 (1 HSPs)
chr8 (203-256)||(42355144-42355197)
[»] chr2 (2 HSPs)
chr2 (202-254)||(2858942-2858994)
chr2 (203-256)||(42436868-42436921)
[»] chr7 (1 HSPs)
chr7 (210-253)||(4018725-4018768)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 43061561 - 43061808
Alignment:
Q  10 acacagtactattgaatccatttatcttttgcatttcnnnnnnn--ggtacaattatcttttgcattctta--atataataatagtagtagtagcaaata 105  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  43061561 acacagtactattgaatccatttatcttttgcatttttttttttttggtacaattatcttttgcattcttataatataataatagtagtagtagcaaata 43061660  T
Q  106 gtgctcttnnnnnnnnctagcaatttaaagaagtcccacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgcc 205  Q
    ||||||||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  43061661 gtgctcttaaaaaaa-ctagcaatttaaagaagtcacacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgtc 43061759  T
Q  206 gagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  43061760 gagtttggtaacacaaacttataacctaagtaggggcattaagatgttg 43061808  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 36475001 - 36474952
Alignment:
Q  205 cgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||    
T  36475001 cgagtttggtaacacaagcttgtgacttaagtaggcgcattaagatgttg 36474952  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 28745271 - 28745229
Alignment:
Q  211 tggtaacacaaacttgtgacctaagtaggggcattaagatgtt 253  Q
    |||||||||||||||| |||||||| |||| ||||||||||||    
T  28745271 tggtaacacaaacttgggacctaagcagggacattaagatgtt 28745229  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 36465635 - 36465587
Alignment:
Q  205 cgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgtt 253  Q
    ||||||||||||||||| |||||||  |||||||| ||||||| |||||    
T  36465635 cgagtttggtaacacaagcttgtgatttaagtaggcgcattaaaatgtt 36465587  T

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Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 8445564 - 8445695
Alignment:
Q  123 tagcaatttaaagaagtcccacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgccgagtttggtaacacaaa 222  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||| |||||||  |||     
T  8445564 tagcaatttaaagaagtcccacatcgttaattttatgtaagattataatatttataatagattgacaaattagaagaatcgccgagcttggtaatgcaag 8445663  T
Q  223 cttgtgacctaagtaggggcattaagatgttg 254  Q
    |||||||||||| |||||||||||||||||||    
T  8445664 cttgtgacctaaataggggcattaagatgttg 8445695  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 8442864 - 8442982
Alignment:
Q  136 aagtcccacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgccgagtttggtaacacaaacttgtgacctaag 235  Q
    |||||||||||||  || ||||| ||| ||||||  |||||||||||||||||| | | ||| |||||||||| || ||||| ||| ||||| |||||||    
T  8442864 aagtcccacatcgaaaaatttatagaagattatatgatttataatagattgacacagtttaacaattgccgagctttgtaacgcaagcttgtaacctaag 8442963  T
Q  236 taggggcattaagatgttg 254  Q
    || ||||| |||| |||||    
T  8442964 taagggcaataaggtgttg 8442982  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 27512802 - 27512853
Alignment:
Q  203 gccgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  27512802 gccgagtttggtaacgcaaacttgtgatttaagtaggggtattaagatgttg 27512853  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 8440966 - 8441084
Alignment:
Q  136 aagtcccacatcgttaattttatggaaaattataatatttataatagattgacaaattataagaattgccgagtttggtaacacaaacttgtgacctaag 235  Q
    |||||||||||||  || ||||| ||| ||||||  ||||||| |||||||||| | | ||| ||||| |||| || |||||  || ||||| |||||||    
T  8440966 aagtcccacatcgaaaaatttatagaagattatatgatttatagtagattgacacagtttaacaattgtcgagctttgtaacgtaagcttgtaacctaag 8441065  T
Q  236 taggggcattaagatgttg 254  Q
    |||||||| |||| |||||    
T  8441066 taggggcaataaggtgttg 8441084  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 921029 - 920976
Alignment:
Q  203 gccgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttgaa 256  Q
    ||||||||| ||||||||||||| ||||||||| |||| |||||||||||||||    
T  921029 gccgagtttagtaacacaaacttatgacctaagcagggacattaagatgttgaa 920976  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 9317651 - 9317607
Alignment:
Q  210 ttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    |||||||||||| |||||||| ||||||||| ||||||| |||||    
T  9317651 ttggtaacacaagcttgtgacataagtagggtcattaaggtgttg 9317607  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 54383590 - 54383634
Alignment:
Q  210 ttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||    
T  54383590 ttggtaacgcaagcttgtgacctaagtaggggcattaagatgttg 54383634  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 4816698 - 4816739
Alignment:
Q  213 gtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    ||||| ||| ||||||||||||||||||||||||||||||||    
T  4816698 gtaacgcaagcttgtgacctaagtaggggcattaagatgttg 4816739  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 42355197 - 42355144
Alignment:
Q  203 gccgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttgaa 256  Q
    |||| |||||||||| ||||||| | |||||||||| |||||||||||||||||    
T  42355197 gccgtgtttggtaacgcaaacttataacctaagtagaggcattaagatgttgaa 42355144  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 2858994 - 2858942
Alignment:
Q  202 tgccgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttg 254  Q
    ||||||| |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  2858994 tgccgagcttggtaacacaaacttgtgatctaagtagggatattgagatgttg 2858942  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 42436921 - 42436868
Alignment:
Q  203 gccgagtttggtaacacaaacttgtgacctaagtaggggcattaagatgttgaa 256  Q
    |||||| ||||||||||||| ||||||||||| ||  || ||||||||||||||    
T  42436921 gccgagcttggtaacacaaatttgtgacctaaataaaggtattaagatgttgaa 42436868  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 4018768 - 4018725
Alignment:
Q  210 ttggtaacacaaacttgtgacctaagtaggggcattaagatgtt 253  Q
    ||||||||| || ||||||||||||||| |||||||||||||||    
T  4018768 ttggtaacagaagcttgtgacctaagtaagggcattaagatgtt 4018725  T

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