View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1076_low_2 (Length: 568)
Name: NF1076_low_2
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1076_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 52239280 - 52238900
Alignment:
| Q |
10 |
tctaagtaattaatgcttttacttcaccccgtgtctgtaggtgcaagactattcgtttcctcttgatttgtgcatgtgagattgttgcttctacacgata |
109 |
Q |
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| T |
52239280 |
tctaagaaattaatgcttttacttaaccccgtgtctgtaggtgcaagactattcgtttcat-tagttttgtgcatgtgtgtttgttgcttctacacgtta |
52239182 |
T |
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| Q |
110 |
ttctctaattgattttaactaaaatatagtcaattttttaagtaaagcttcatcaaactcatttgccatttaggtttaattacgtgattaattttctacg |
209 |
Q |
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| T |
52239181 |
ttctctaattgattttaacagaaatatagtcaattttttaagtaaagttttatcaaactcatttgccatttaggtttaattacatgattaattttctacg |
52239082 |
T |
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| Q |
210 |
tatcttctttgtgtatggatccgtttgttacataggagaattcttgatatgtattttagttttgatgaatactgctaatcctctaagtaaaattaattct |
309 |
Q |
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| T |
52239081 |
tatcttctttgtgtatggatccgtttgttacataggagaattcttgatatgtattttagttttgatgaatactgctaatcctctaagtaaaattaattct |
52238982 |
T |
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| Q |
310 |
ttcaaaatttatttacaaaaatatgacataatatttcttaattggatccaaccaaacttcatcaatatcgacgtgttcagct |
391 |
Q |
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| T |
52238981 |
ttcaaaatttatttacaaaaatatgacataatatttcataattggatccaaccaaacttcatcaatatcgacgtgttcagct |
52238900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 458 - 568
Target Start/End: Complemental strand, 52238792 - 52238682
Alignment:
| Q |
458 |
gcaaataatccaaaaataatttataaacagagacaaaataatttgtttttcttcttaaaaagtgtcatgtaaataatctatgttattgaatatcataata |
557 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52238792 |
gcaaataatccaaaaataatttataaacagagacaaaataatttgtttttcttcttaaaaagtgtcatgtaaataatctaagttattgaatatcataata |
52238693 |
T |
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| Q |
558 |
tatttttatat |
568 |
Q |
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| T |
52238692 |
tatttttatat |
52238682 |
T |
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