View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1076_low_3 (Length: 491)
Name: NF1076_low_3
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1076_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 52 - 412
Target Start/End: Original strand, 29719605 - 29719965
Alignment:
| Q |
52 |
aagtctaccccatagattggggatgtatcttgactctcaaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctt |
151 |
Q |
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| T |
29719605 |
aagtctaccccatagattggggatgtatcttgactctcaaaagctttaacaagatcaagttcaaaatgatgaagatctatggccaattgaaaatatgctt |
29719704 |
T |
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| Q |
152 |
tcctggttgaaagtttcatagaagcagctaccatgtgcatcccattgaccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtaca |
251 |
Q |
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| T |
29719705 |
tcctggttgaaagtttcatagaagcagctaccatgtgcatcccattggccttcccaaaagttcatttcatcgcctttcaagaaatccacccaaatgtaca |
29719804 |
T |
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| Q |
252 |
tcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaact |
351 |
Q |
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| T |
29719805 |
tcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgcaaatataaaaataatgagattatttaatgtaaact |
29719904 |
T |
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| Q |
352 |
caaattcatatttaggagttttggaagcactaatactattaatttttctcatgtatatggt |
412 |
Q |
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| T |
29719905 |
caaattcatatttaggagttttggaagcactaatactattaacttttctcatgtatatggt |
29719965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 118 - 390
Target Start/End: Complemental strand, 24537858 - 24537587
Alignment:
| Q |
118 |
tgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgcatcccattgaccttcccaaaagttcatt |
217 |
Q |
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| T |
24537858 |
tgataaagatctatggccatttgaaaatatgcct-cttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaa-ttcatt |
24537761 |
T |
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| Q |
218 |
-tcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgc |
316 |
Q |
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| T |
24537760 |
atcgtcaccatgctggaaatcgatccaaatacgcgtcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatat |
24537661 |
T |
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| Q |
317 |
aaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatactat |
390 |
Q |
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| T |
24537660 |
aaataaaacaacaatgagattatttaatgtaaactcaaattcatatttaggaggtttggaagcactaatactat |
24537587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 406 - 482
Target Start/End: Original strand, 29722903 - 29722979
Alignment:
| Q |
406 |
atatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagtattat |
482 |
Q |
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| T |
29722903 |
atatggtttaaaggattaacctcggacaaatatcgataaactataacttcactattattaatgtgtcgaagtattat |
29722979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 478
Target Start/End: Complemental strand, 24537509 - 24537429
Alignment:
| Q |
398 |
tctcatgtatatggtttaaaggattaacctcggacaaatatcgataaattataacttcactattattaatgtgttgaagta |
478 |
Q |
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|||||| ||||||||||||| |||||||||| || ||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
24537509 |
tctcatatatatggtttaaaagattaacctccagaaagtattgttaaattataacttcactattattaatgtgtcgaagta |
24537429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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