View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1076_low_5 (Length: 444)
Name: NF1076_low_5
Description: NF1076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1076_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 30 - 431
Target Start/End: Complemental strand, 37937942 - 37937541
Alignment:
| Q |
30 |
ctatcttcaaagagagatcaatttccatctttttggattcttcttctctacccattgtgaacaagaaaaatctattgctttgtcttctcttaagatatat |
129 |
Q |
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| T |
37937942 |
ctatcttcaaagagagatcaatttccatctttttggattcttcttctctacccattgtgaacaagaaaaatctattgctttgtcttctcttaagatatat |
37937843 |
T |
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| Q |
130 |
ataaatataaataaaagtatgctacttttaaggcaccaaagtcaatgcaatcgtcctaaacctaaagacgttttcttatctttggacacacttggacgca |
229 |
Q |
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| T |
37937842 |
ataaatataaataaaagtatgctacttttaaggcaccaaagtcaatgcaatcgtcctaaacctaaagacgttttcttatctttggacacacttggacgca |
37937743 |
T |
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| Q |
230 |
tctaagttttgactttatttagcttcttaatgaactcctaattaaattaattagagtctacaagtatctattttaaaattaacaagtgtagggagggcag |
329 |
Q |
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| T |
37937742 |
tctaagttttgactttatttagcttcttaatgaactcctaattaaattaattagagtctacaagtatctattttaaaattaacaagtgtagggagggcag |
37937643 |
T |
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| Q |
330 |
tgggcaccctatactatatttgattattttggccctatagtcacggaaaaagacaaaaatgaccattagtacaagtcaacttcatcatgggtgattgacc |
429 |
Q |
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| T |
37937642 |
tgggcaccctatactatatttgattattttggccctatagtcacggaaaaagacaaaaatgaccattagtacaagtcaacttcatcatgggtgattgacc |
37937543 |
T |
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| Q |
430 |
ct |
431 |
Q |
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| T |
37937542 |
ct |
37937541 |
T |
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