View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10770_high_2 (Length: 226)
Name: NF10770_high_2
Description: NF10770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10770_high_2 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0505 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 26620287 - 26620516
Alignment:
| Q |
2 |
gcaaaggccatataacaagcaacctaacgaaccaaggtctaagggtgcacaagactaaacatggtgagctaacacgtgaagccctgtgcggatcaccgca |
101 |
Q |
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| T |
26620287 |
gcaaaggccatataacaagcaacctaatgaaccaaggtctaagggtgcacaagactaaacacggttagctaacacgtgaagccctgtgcggatcaccgca |
26620386 |
T |
|
| Q |
102 |
caagagcacgtcatagtctgatctccatcgtccacattatccgtataagagtgactcagtgtcacgctcaaggtac-----tgacttgaacgttagagtg |
196 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26620387 |
caagagcacgtcatagtcttatctccatcgtccacattatctgtataagagtgactcagtgtcacgctcaaggtactgacttgacttgaacgttagagtg |
26620486 |
T |
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| Q |
197 |
ctaatgtgcctgcatgcacctttctcctcc |
226 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26620487 |
ctaatgtgcctgcatgcacctttctcctcc |
26620516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 30429969 - 30430000
Alignment:
| Q |
189 |
ttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30429969 |
ttagagtgctaatgtgcctgcatgcacctttc |
30430000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 8122970 - 8123015
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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| T |
8122970 |
tactgacttgagcgttggagtgctaacgtgcctgcatacacctttc |
8123015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 45715030 - 45714985
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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||||||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
45715030 |
tactgacttgagcgttggagtgctaacgtgcctgcatgcacctttc |
45714985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 26163668 - 26163625
Alignment:
| Q |
177 |
ctgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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| T |
26163668 |
ctgacttgagcgttggagtgctaatgtgcatgcatgcacctttc |
26163625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 19846104 - 19846059
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||||||||| |
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| T |
19846104 |
tactgacttgagtgttagagtgctaatgtgtctgcaggcacctttc |
19846059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 30827100 - 30827060
Alignment:
| Q |
180 |
acttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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|||| |||||| ||||||||| ||||||||||||||||||| |
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| T |
30827100 |
actttaacgtttgagtgctaacgtgcctgcatgcacctttc |
30827060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0505 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0505
Description:
Target: scaffold0505; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 7920 - 7875
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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|||||| |||| |||||||||||||| |||||| |||||||||||| |
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| T |
7920 |
tactgatttgagcgttagagtgctaacgtgcctacatgcacctttc |
7875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 4229891 - 4229842
Alignment:
| Q |
177 |
ctgacttgaacgttagagtgctaatgtgcctgcatgcacctttctcctcc |
226 |
Q |
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||||||||| |||||||||||||| |||||| || |||||||||||||| |
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| T |
4229891 |
ctgacttgagcgttagagtgctaacgtgcctacaaacacctttctcctcc |
4229842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 7486580 - 7486535
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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|||||| |||| |||| ||||||||| ||||||||||||||||||| |
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| T |
7486580 |
tactgaattgagcgttggagtgctaacgtgcctgcatgcacctttc |
7486535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 9135417 - 9135462
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
| |
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||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
9135417 |
tactgacttgagcgttagagtgctaacgtgcctatatgcacctttc |
9135462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 9867995 - 9868040
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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||||||||||| ||| |||||||||| || |||||||||||||||| |
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| T |
9867995 |
tactgacttgagcgtcagagtgctaacgttcctgcatgcacctttc |
9868040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 3590862 - 3590817
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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||||||||||| ||| ||||||||| ||||||||||||||||||| |
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| T |
3590862 |
tactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttc |
3590817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 26977775 - 26977730
Alignment:
| Q |
175 |
tactgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||| ||||||||| |
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| T |
26977775 |
tactgacttgagcgttggagtgctaacgtgcctgcaggcacctttc |
26977730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 33101567 - 33101608
Alignment:
| Q |
179 |
gacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
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|
||||||| |||| ||||||||| ||||||||||||||||||| |
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| T |
33101567 |
gacttgagcgttggagtgctaacgtgcctgcatgcacctttc |
33101608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 2930514 - 2930546
Alignment:
| Q |
79 |
gaagccctgtgcggatcaccgcacaagagcacg |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
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|
| T |
2930514 |
gaagtcctgtgcggatcaccgcacaagagcacg |
2930546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 40830 - 40786
Alignment:
| Q |
176 |
actgacttgaacgttagagtgctaatgtgcctgcatgcacctttc |
220 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||||| |||||| |
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| T |
40830 |
actgacttgagcgttggagtgctaacgtgcctgcatgcgcctttc |
40786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 30014756 - 30014724
Alignment:
| Q |
178 |
tgacttgaacgttagagtgctaatgtgcctgca |
210 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
30014756 |
tgacttgaacgttagagtgctaacgtgcctgca |
30014724 |
T |
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