View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_1 (Length: 809)
Name: NF10771_1
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 505 - 786
Target Start/End: Original strand, 16586328 - 16586609
Alignment:
| Q |
505 |
gtcagaaaaccctacatgtaacatcaacattgggatcaataggctgttgagccttagaaacccacaacttagcatgctcaatacatctcctcaacgcatt |
604 |
Q |
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| T |
16586328 |
gtcagaaaaccctacatgtaacatcaacattgggatcaataggctgttgagccttagaaacccacaacttagcatgctcgatacatctcctcaacgcatt |
16586427 |
T |
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| Q |
605 |
cttatgcgaaaagctcgaatcggccggtctcgaaatcaacaagccatacaaaccagagatcgcatccaaatccttctcacccagcagatccgtcgcatca |
704 |
Q |
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| T |
16586428 |
cttatgcgaaaagctcgaatcggccggtctcgaaatcaacaagccatacaaaccagagatcgcatccaaatccttctcacccagcagatccgtcgcatca |
16586527 |
T |
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| Q |
705 |
tccgtcacataatcatacgtcaggcaacacccacgctcatgtgtcctggtgagcatcgttgaagtaaaatcattctgagttt |
786 |
Q |
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| T |
16586528 |
tccgtcacataatcatacgtcaggcaacacccacgctcatgtgtcctggtgagcatcgttgaagtaaaatcattctgagttt |
16586609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 631 - 786
Target Start/End: Complemental strand, 16588634 - 16588480
Alignment:
| Q |
631 |
gtctcgaaatcaacaagccatacaaaccagagatcgcatccaaatccttctcacccagcagatccgtcgcatcatccgtcacataatcatacgtcaggca |
730 |
Q |
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| T |
16588634 |
gtctcgaaatcaacaacctatacaaacccgatatcacatacaaatcattctcacacaacagatccttcgcatcatcaatcacataatcataagtcaaac- |
16588536 |
T |
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| Q |
731 |
acacccacgctcatgtgtcctggtgagcatcgttgaagtaaaatcattctgagttt |
786 |
Q |
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| T |
16588535 |
atacccacgctcacgcgtcatcgtaagcattgttgaagtaaaatcattctgtgttt |
16588480 |
T |
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