View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_2 (Length: 672)
Name: NF10771_2
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_2 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 343 - 644
Target Start/End: Original strand, 5315816 - 5316117
Alignment:
| Q |
343 |
taaattgagggttgtgacccttgttgttaagtctttgaacacctccaagnnnnnnn-cctaatcatttgttttagtttaaaaatattaccaaaagttgaa |
441 |
Q |
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| T |
5315816 |
taaattgagggttgtgacccttgttgttaagtctttgaacacctccaagttttttttcctgatcatttgttttagtttaaaaatattaccaaaagttgaa |
5315915 |
T |
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| Q |
442 |
tctactccttaagattgttcataatattggataagttagcactccaacgttgcctcgttttgagttttttatgataacttcagcaacgagctgtccaaat |
541 |
Q |
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| T |
5315916 |
tctacttcttaagattgttcataatattggataagttagcactccaacgttgcctctttttgagttttttatgataacttcagcaacgagctgtccaaat |
5316015 |
T |
|
| Q |
542 |
ttactaaagcatttgcacattgatcttgctccaaggttaagattgacacaccttcatctcccaatccaattcaagcaatcacagaattttcctcaccaga |
641 |
Q |
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| T |
5316016 |
ttactaaagcatttgcacattgatcttgctccaagg-taagattgacacaccttcatctcccaatccaattcaagcaatcacagaattttcctcaccaga |
5316114 |
T |
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| Q |
642 |
gag |
644 |
Q |
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| T |
5316115 |
gag |
5316117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 5315427 - 5315754
Alignment:
| Q |
16 |
atcatcactctatatgtctatactaataagaagtttgataattaaacaatcttgatgaacaatcttaatgagtagaacatacttttggtgataattttaa |
115 |
Q |
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| T |
5315427 |
atcatcactctatatgtctatactaataagaagtttgataattaaacaatcttgatgaacaatcttaacgagtagaacatacttttg-tgataattttaa |
5315525 |
T |
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| Q |
116 |
attaaaacaaatgataaaaaacaagattaaaggtattcaacaacttattaattaacatgagttgcaacctttattagacaagttagagaaaaagttatgt |
215 |
Q |
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| T |
5315526 |
attaaaacaa-tgataaaaaacaagattaaaggtattcaacaatttgttaattaacatgagttgcaacctttatttgacaagttagagaaaaagttacgt |
5315624 |
T |
|
| Q |
216 |
aaacaattgtagaaagtttcagatagaat---gacaggtgagtttagaaatcttgcaaatattggattatggatggggtaaaattatctc---ctttaat |
309 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||| |
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| T |
5315625 |
aaataattgtagaaagtttcagatagaatgaagacaggtgagtttagaaatcttgtaaatattgaattatggatggagtaaaattatctccttctttaat |
5315724 |
T |
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| Q |
310 |
tcaatatttgcaagatttttgcatccacgt |
339 |
Q |
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| T |
5315725 |
tcaatatttgcaagatttttccatccacgt |
5315754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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