View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_4 (Length: 426)
Name: NF10771_4
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 34907959 - 34908388
Alignment:
| Q |
1 |
attttttcgagcttcttgcattaatc----gaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttatattaccttaatagtt |
96 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34907959 |
attttttcgagcttcttgcattaattaattgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaattcgttatattaccttaatagtt |
34908058 |
T |
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| Q |
97 |
ggtcgatttccggccaccaatgctttctcttctcaaatcagtttctaaggtttacaaatcagctacagcttctctacataaagatgctgatttcaatgct |
196 |
Q |
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| T |
34908059 |
ggtcgatttccggccaccaatgctttctcttctcaaatcagtttctaagttttacaaatcagctacaacttctctacataaagatgctgatttcaatgct |
34908158 |
T |
|
| Q |
197 |
ttattcaactcctgcgtcaatgttaatgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaagctta |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34908159 |
ttattcaactcctgcgtcaatgttaatgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaagctta |
34908258 |
T |
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| Q |
297 |
ttaatttatatgttactcatggtgatatttcattatctcgttccacatttgattatattcacaaaaagaatatcttttcatggaattcaattatatctgc |
396 |
Q |
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| T |
34908259 |
ttaatttatatgtcactcatggtgatatttcattatctcgttccacatttgattatattcacaaaaagaatatcttttcatggaattcaattatatctgc |
34908358 |
T |
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| Q |
397 |
ttatgttcgatttggaaaataccatgaagc |
426 |
Q |
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| T |
34908359 |
ttatgttcgatttggaaaataccatgaagc |
34908388 |
T |
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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8574859 - 8574780
Alignment:
| Q |
1 |
attttttcgagcttcttgcattaatcgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttat |
81 |
Q |
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| T |
8574859 |
attttttcgaacttcttgcattaactgaatcattttagctgaacccc-ttttctcaaagttacgtcgcaccaagtcgttat |
8574780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 8604964 - 8604886
Alignment:
| Q |
2 |
ttttttcgagcttcttgcattaatcgaatcattttagctgaacccctttttctcaaatttacgtcgcaccaagtcgttat |
81 |
Q |
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| T |
8604964 |
tttttacgagcttcttggattaacggaatcattttagctgaacccc-ttttctcaaagttatgtcgcaccaagtcgttat |
8604886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 331
Target Start/End: Original strand, 1815787 - 1815919
Alignment:
| Q |
193 |
tgctttattcaactcctgcgtcaatgttaatgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaag |
292 |
Q |
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|||||||| |||||||||| | |||||||||| || ||||||||||||||||| |||| || |||||||| |||||| ||||| |||| ||| || |
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| T |
1815787 |
tgctttatccaactcctgcataaatgttaatgtta------agcttcatgctcttcttgtggtgttgggaaaatcccaaaacgttgttctatctacagag |
1815880 |
T |
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| Q |
293 |
cttattaatttatatgttactcatggtgatatttcatta |
331 |
Q |
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|||| |||| | ||||| |||| ||| |||| |||||| |
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| T |
1815881 |
cttagtaatatgtatgtcactcttggatatatctcatta |
1815919 |
T |
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