View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_6 (Length: 372)
Name: NF10771_6
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 28470755 - 28471113
Alignment:
| Q |
13 |
aaaataattaactaagagaaaataaaaacaaacatcaaaccagcataaaaagaattaatggaggtaagaaaaagttttttacaattactcactcaaatta |
112 |
Q |
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| T |
28470755 |
aaaataattaactaaga--aaataaaaacaaacatcaaaccagcataaaaagaattaatgaaggtaagaaaaagttttttacaattattcactcaaatta |
28470852 |
T |
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| Q |
113 |
caaaccatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatt |
212 |
Q |
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| T |
28470853 |
caaaccatgaagatgttcatgcttgcatagtcatgacaatagcattaaaatcctattttccaaaatagaaaacaaaacaaaatccattctactagatatt |
28470952 |
T |
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| Q |
213 |
tgttctgtaaacaatgcttcaaacacaaaaa-ccagatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaa |
311 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28470953 |
tgttctgtaaacaatgcttcaaacacaaaaacccagatacaatttctcaaacattagacctttgatgcaattcatgagtattccaccattgatgaacaaa |
28471052 |
T |
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| Q |
312 |
tacaccattgcttctaagatccttgtaaatatccatgcatctctctctttcaccatcttca |
372 |
Q |
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| T |
28471053 |
gacaccattgcttctaagacccttgtaaatatccatgcatctctctctttcaccatcttca |
28471113 |
T |
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