View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_1 (Length: 618)
Name: NF10771_low_1
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 4035703 - 4035293
Alignment:
| Q |
19 |
tcagccaccatagttctgccggcgacagcaagagtaacttcattatgcctctgtccaaccaccccgccgatgggtggaggtggaggagggttgaaatcct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035703 |
tcagccaccatagttctgccggcgacagcaagagtaacttcattatgcctctgtccaaccaccccgccgatgggtggaggtggaggagggttgaaatcct |
4035604 |
T |
|
| Q |
119 |
tgagaacaccagtttgaagaaactcagtaagcacacggccacgtgaagggacagatggccatcggagatcagaagaaggagcgttgagatccaaacaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035603 |
tgagaacaccagtttgaagaaactcagtaagcacacggccacgtgaagggacagatggccatcggagatcagaagaaggagcgttgagatccaaacaaag |
4035504 |
T |
|
| Q |
219 |
tcctccggcgaccggcgccggtgggaagttggtttttgctttagctccacgaagagaacgagcggcgccgtcgtaagcaagagcagcttcttcaggagtg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035503 |
tcctccggcgaccggcgccggtgggaagttggtttttgctttagctccacgaagagaacgagcggcgccgtcgtaagcaagagcagcttcttcaggagtg |
4035404 |
T |
|
| Q |
319 |
tcaaatgtacccaaccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaacacctctgtagtgtcctt |
418 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035403 |
tcaaatgtacccagccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaacacctctgtagtgtcctt |
4035304 |
T |
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| Q |
419 |
cacgattcgct |
429 |
Q |
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||||||||||| |
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| T |
4035303 |
cacgattcgct |
4035293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 493 - 608
Target Start/End: Complemental strand, 4035229 - 4035114
Alignment:
| Q |
493 |
ggtttgcgaagtgaagtgagaagtgatttgagtttataaaagtgaagggacccacattggctcccgtaattgtcggctggccggcaccactacaatacta |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035229 |
ggtttgcgaagtgaagtgagaagtgatttgagtttataaaagtgaagggacccacattggctcccgtaattgtcggctggccggcaccactacaatacta |
4035130 |
T |
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| Q |
593 |
ctactaccaccctttg |
608 |
Q |
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|||||||||||||||| |
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| T |
4035129 |
ctactaccaccctttg |
4035114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 36722885 - 36722997
Alignment:
| Q |
292 |
taagcaagagcagcttcttcaggagtgtcaaatgtacccaaccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtc |
391 |
Q |
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|||||| | ||||||||||||| || ||||| || |||||||| || || | ||||||||| ||||| | ||||||||| ||| | || |||||||||| |
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| T |
36722885 |
taagcatgtgcagcttcttcagcggtatcaaaggtccccaaccagactcgagctttcttccagggatctctaatctcagcagcgaatcgaccccatggtc |
36722984 |
T |
|
| Q |
392 |
gcttcctaacacc |
404 |
Q |
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||||||| ||||| |
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| T |
36722985 |
gcttccttacacc |
36722997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 36710061 - 36710131
Alignment:
| Q |
331 |
aaccaaacacgcgttttcttccacggatcgcgaatctcagcggcgtagcgtccccatggtcgcttcctaac |
401 |
Q |
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||||| ||||| ||||||||||| ||||| | ||||||||| ||| | || |||||||||||||| ||||| |
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| T |
36710061 |
aaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccccatggtcgctttctaac |
36710131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 395
Target Start/End: Original strand, 30412837 - 30412956
Alignment:
| Q |
276 |
acgagcggcgccgtcgtaagcaagagcagcttcttcaggagtgtcaaatgtacccaaccaaacacgcgttttcttccacggatcgcgaatctcagcggcg |
375 |
Q |
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|||||||||| ||||||||| ||||||||||| | |||||||| ||||| | ||| || || ||||||| | |||||||||||||| |||||| |
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| T |
30412837 |
acgagcggcgttgtcgtaagctctggcagcttcttcggcggtgtcaaaggtacctagccagacgcggcttttcttaccgggatcgcgaatctcggcggcg |
30412936 |
T |
|
| Q |
376 |
tagcgtccccatggtcgctt |
395 |
Q |
| |
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|| || |||||||||||||| |
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| T |
30412937 |
taacggccccatggtcgctt |
30412956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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