View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_12 (Length: 236)
Name: NF10771_low_12
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_12 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 41971628 - 41971850
Alignment:
| Q |
14 |
catatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatgg-ccactgctacaataatc |
112 |
Q |
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| T |
41971628 |
catatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatgggccactgctacaataatc |
41971727 |
T |
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| Q |
113 |
tgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgtggtatgtattattttgcctaaccactagctccagtggaaatgattagt |
212 |
Q |
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| T |
41971728 |
tgtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgtggtatgtattattttgcctaaccactagctccagtggaaatgattagt |
41971827 |
T |
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| Q |
213 |
gtactattatgtgttatgaatttc |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
41971828 |
-tactattatgtgttatgaatttc |
41971850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 176
Target Start/End: Original strand, 41971856 - 41971885
Alignment:
| Q |
147 |
tgagcaacatattattgtggtatgtattat |
176 |
Q |
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| T |
41971856 |
tgagcaacatattattgtggtatgtattat |
41971885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 1239122 - 1239343
Alignment:
| Q |
14 |
catatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatggccactgctacaataatct |
113 |
Q |
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| T |
1239122 |
catatgcctatcacaacaagcaatgcataccactttggaagctcgcctggatttccatcaactccaaatttagattgaacggccgctgctacaataatct |
1239221 |
T |
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| Q |
114 |
gtgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgtggtatgtattattttgcctaaccactagctccagtggaaatgattagtg |
213 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| |||||||||| ||| |||| ||||||||| || |
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| T |
1239222 |
gtgtcaaaacaaattcgtattagcaaagaaagatgagcaacatattattgtggtaggtgttattttttctaaccactaactctagtgcaaatgattattg |
1239321 |
T |
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| Q |
214 |
tactattatgtgttatgaatttc |
236 |
Q |
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||| | ||||||||||||||||| |
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| T |
1239322 |
tac-actatgtgttatgaatttc |
1239343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 42517741 - 42517842
Alignment:
| Q |
14 |
catatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatggccactgctacaataatct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
42517741 |
catatgcctatcacaacaagcaatgcataccactttggcagctcaccaggattcccatcaactccaaatttagatgcaatggccacggctacaatgatct |
42517840 |
T |
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| Q |
114 |
gt |
115 |
Q |
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|| |
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| T |
42517841 |
gt |
42517842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 21403567 - 21403419
Alignment:
| Q |
15 |
atatgcctatcacaacaagcaatgcataccactttggaagctcacctggatttccatcaactccaaatttaaatgcaatggccactgctacaataatctg |
114 |
Q |
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||||||||| |||||||| || | |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |
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| T |
21403567 |
atatgcctaccacaacaatca-tacataccactttgacagctcacctggatttccatcaacaccaaatttagatgcaatggctgctgctacaataatctg |
21403469 |
T |
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| Q |
115 |
tgtcaaaacaaatttgtattagcaaagaaatatgagcaacatattattgt |
164 |
Q |
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|| ||||||||||||||||||| ||||||||||| | || |||||||||| |
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| T |
21403468 |
tgccaaaacaaatttgtattaggaaagaaatatgtgtaaaatattattgt |
21403419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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