View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_3 (Length: 453)
Name: NF10771_low_3
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 47836527 - 47836949
Alignment:
| Q |
20 |
tggaacacattctgccagtatttaagaaaccatcgaccagtgccactttctgcttcaatgtgcaatggaacacatgttcttgaattccttcactatcttg |
119 |
Q |
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| T |
47836527 |
tggaacacattctgccagtatttaagaaaccatcgaccagtgccactttctgcttcaatgtgcaatggaacacatgttcttgaattccttcactatcttg |
47836626 |
T |
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| Q |
120 |
atcaatttgggaagactaaggttcacaatccaacttgtcctttctttgggatgccaaaccctccatctccatgtgcttgtcctctccgtcaggcgtgggg |
219 |
Q |
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| T |
47836627 |
atcaatttgggaagactaaggttcacaatccaacttgtcctttctttgggatgccaaaccctccatctccatgtgcttgtcctctccgtcaggcgtgggg |
47836726 |
T |
|
| Q |
220 |
tagccttgatgctcttgtcggtcgcctccgcgccgcatatgatcaagagatcaatggtgga---agtaacccttttggtgatggtgctgttaggttttac |
316 |
Q |
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| T |
47836727 |
tagccttgatgctcttgtcggtcgcctccgcgccgcatatgatcaagagatcaatggtggaagtagtaatccttttggtgatggtgctgttaggttttac |
47836826 |
T |
|
| Q |
317 |
ttgcgtgatgttcgtgattttcagtcaaaggctagaggagttagctaccataagaaaaggaagagacctaaccgcaacatcacaactatttctcaatcat |
416 |
Q |
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| T |
47836827 |
ttgcgtgatgttcgtgatttccagtcaaaggctagaggagttagctaccataagaaaaggaagagacctaaccgcaacatcacaactatttctcaatcat |
47836926 |
T |
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| Q |
417 |
cctcatgaactcaaatctaaatc |
439 |
Q |
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| T |
47836927 |
cctcatgaactcaaatctaaatc |
47836949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 35608631 - 35608766
Alignment:
| Q |
111 |
actatcttgatcaatttgggaagactaaggttcacaatccaacttgtcctttctttgggatgccaaaccctccatctccatgtgcttgtcctctccgtca |
210 |
Q |
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| T |
35608631 |
actatcttgaccagtttgggaaaaccaaagttcacaaccatccttgtcctttctttggcatccctaatccaccagctccttgtccatgtcctcttcgtca |
35608730 |
T |
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| Q |
211 |
ggcgtggggtagccttgatgctcttgtcggtcgcct |
246 |
Q |
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| T |
35608731 |
agcgtggggtagtctcgacgctctcatcggtcgcct |
35608766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 387
Target Start/End: Original strand, 35608806 - 35608910
Alignment:
| Q |
283 |
taacccttttggtgatggtgctgttaggttttacttgcgtgatgttcgtgattttcagtcaaaggctagaggagttagctaccataagaaaaggaagaga |
382 |
Q |
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||||||||||||| | || |||||||| |||| || | || |||||||||||||| |||| ||||||| |||||||| | |||||||||||||| |
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| T |
35608806 |
taacccttttggttctcgttctgttaggatttatttaagggacgttcgtgattttcaagcaaaatctagaggggttagctatgaaaagaaaaggaagagg |
35608905 |
T |
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| Q |
383 |
cctaa |
387 |
Q |
| |
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||||| |
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| T |
35608906 |
cctaa |
35608910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 35814573 - 35814626
Alignment:
| Q |
92 |
catgttcttgaattccttcactatcttgatcaatttgggaagactaaggttcac |
145 |
Q |
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| T |
35814573 |
catgttcttgattttcttcgttaccttgatcaatttggtaagactaaggttcac |
35814626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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