View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_4 (Length: 438)
Name: NF10771_low_4
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Complemental strand, 30026278 - 30025871
Alignment:
| Q |
11 |
aagcagagaatataggcagaaaagttgtcaatcattcccatcaacacgatccttgatactccggttcatatcatggtaataaacgtgcgacaagtgagta |
110 |
Q |
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||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30026278 |
aagcatagaatataggaaggaaagttgtcaatcattcccatcaacacgatccttgatactctggttcatatcatggtaataaacgtgcgacaagtgagta |
30026179 |
T |
|
| Q |
111 |
caaagaagttccttatctagtcaagggttatattaaaattggagttaccatcccccaatttgaattgaaactcatatttaaagagctcaaatagttttaa |
210 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30026178 |
caaagaggttccttatctagtcaagggttataccaaaattggagttaccatcccccaatttgaattgaaactcatatttaaagagctcaaatagttttaa |
30026079 |
T |
|
| Q |
211 |
caatagagtttcaaattaaagatccttctgaatagatgtattcaaaaccaaatcaaaaattacatccacatttttcataatctaaaatctttaaatcaaa |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30026078 |
caatagagtttcaaattaaagatccttctaaatagatgtatttaaaaccaaataaaaaattacatccacatttttcataatctaaaatctttaaatcaaa |
30025979 |
T |
|
| Q |
311 |
attagtttcaacaatgtcaactcataatnnnnnnnnncccatctccattccatgttgtgtctgttttgcagttccatttacttggtccacaccctttgtc |
410 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30025978 |
attagtttcaacaatgtcaactcataat-aaaaaaaacccatctccattccatgttgtgtctgttttgcagttccatttacttggtccacaccctttgtc |
30025880 |
T |
|
| Q |
411 |
cctataaaa |
419 |
Q |
| |
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||||||||| |
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| T |
30025879 |
cctataaaa |
30025871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 42469828 - 42469639
Alignment:
| Q |
31 |
aaagttgtcaatcattcccatcaacacgatccttgatactccggttcatatcatggtaataaacgtgcgacaagtgagtacaaagaagttccttatctag |
130 |
Q |
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|||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| || | ||| | | || | ||| |||||| ||||||| ||||| |
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| T |
42469828 |
aaagttttcaatcattcccatcaacaaggtccttgatactccagttcatatcatgatagtgaacataaggcacataagtgcaaagaggttccttgtctag |
42469729 |
T |
|
| Q |
131 |
tcaagggttatattaaaat-tggagttaccatcccccaatttgaattgaaactcatatttaaagagctcaaatagttttaacaatagagtt |
220 |
Q |
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||||||| ||||| |||| | |||||||||||||||||||||||||||||| ||| ||||| | |||| ||||||||| ||||||||||| |
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| T |
42469728 |
tcaagggctatatcaaaaactagagttaccatcccccaatttgaattgaaacccatctttaaggtgctc-aatagttttgacaatagagtt |
42469639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28427052 - 28426985
Alignment:
| Q |
18 |
gaatataggcagaaaagttgtcaatcattcccatcaacacgatccttgatactccggttcatatcatg |
85 |
Q |
| |
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|||||||||| |||||| |||||||||||||||||| | ||||||||||||| |||||||||||| |
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| T |
28427052 |
gaatataggcgagaaagtttccaatcattcccatcaacaaggtccttgatactccagttcatatcatg |
28426985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 39169401 - 39169222
Alignment:
| Q |
41 |
atcattcccatcaacacgatccttgatactccggttcatatcatggtaataaacgtgcgacaagtgagtacaaagaagttccttatctagtcaagggtta |
140 |
Q |
| |
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|||||| ||||||||| | ||||||||||||| |||||||||||| || | ||| | | || |||||||||||| ||||||| ||||| |||||| || |
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| T |
39169401 |
atcatttccatcaacaaggtccttgatactccagttcatatcatgatagtgaacataaggcacatgagtacaaagaggttccttgtctagccaagggcta |
39169302 |
T |
|
| Q |
141 |
tattaaaat-tggagttaccatcccccaatttgaattgaaactcatatttaaagagctcaaatagttttaacaatagagtt |
220 |
Q |
| |
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|| |||| | |||||||||||||||||||||||||||||| ||| ||||| | |||| ||||||||| ||||||||||| |
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| T |
39169301 |
taccaaaaactagagttaccatcccccaatttgaattgaaacccatctttaaggtgctc-aatagttttgacaatagagtt |
39169222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 17160969 - 17160784
Alignment:
| Q |
18 |
gaatataggcagaaaagttgtcaatcattcccatcaacacgatccttgatactccggttcatatcatggtaataaacgtgcgacaagtgagtacaaagaa |
117 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||| |||||||||||||| | ||||| ||||||| | ||||| | || |||||||| ||| |
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| T |
17160969 |
gaatataggcgataaagtttccaatcatttccatcaacaacatccttgatactccagctcataacatggtagtgaacgtaaggcacatgagtacatagag |
17160870 |
T |
|
| Q |
118 |
gttccttatctagtc--aagggttatattaaaa-ttggagttaccatcccccaatttgaattgaaactcatatttaaagagctcaa |
200 |
Q |
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||||||||||| | ||||| ||| |||| || |||||||||||||||||||||||||||||| ||| |||||||| ||||| |
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| T |
17160869 |
gttccttatctttgcctaagggctatcccaaaaattagagttaccatcccccaatttgaattgaaacccatctttaaagaactcaa |
17160784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 6931856 - 6931957
Alignment:
| Q |
41 |
atcattcccatcaacacgatccttgatactccggttcatatcatggtaataaacgtgcgacaagtgagtacaaagaagttccttatctagtcaagggtta |
140 |
Q |
| |
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|||||||||||||||| | ||||||||||||| ||||||||||| || | ||| | | || ||||| |||||| ||||||| ||||| |||||| || |
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| T |
6931856 |
atcattcccatcaacaaggtccttgatactccaattcatatcatgatagtgaacataaggcacatgagtgcaaagaggttccttgtctagccaagggcta |
6931955 |
T |
|
| Q |
141 |
ta |
142 |
Q |
| |
|
|| |
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|
| T |
6931956 |
ta |
6931957 |
T |
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