View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10771_low_5 (Length: 387)
Name: NF10771_low_5
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 56 - 372
Target Start/End: Complemental strand, 48007571 - 48007256
Alignment:
| Q |
56 |
attggagctagctacactagtaattgaggnnnnnnnncaataaatatatgatcacttgttagctttaagccaatcaaggatacccttttctgcttctgaa |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48007571 |
attggagctagctacactagtaattgag-aaaaaaaacaataaatatatgatcacttgttagctttaagccaatcaaggatacccttttctgcttctgaa |
48007473 |
T |
|
| Q |
156 |
agcttcccctcctcctttccttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaataactatcaaccctctgccacacacaaa |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48007472 |
agcttcccctcctcctttccttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaataactatcaaccctctgccacacacaaa |
48007373 |
T |
|
| Q |
256 |
gactgtgattaaattcaatactgaataatgacatactacaacataaaattaaataccctgctttgagagcattacttacctctttgtcatttttctcctt |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48007372 |
gactgtgattaaattcaatactaaataatgacatactacaacataaaattaaataccctgcttttagagcattacttacctctttgtcatttttctcctt |
48007273 |
T |
|
| Q |
356 |
gttttcctctgttttct |
372 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48007272 |
gttttcctctgttttct |
48007256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 106 - 372
Target Start/End: Complemental strand, 1604129 - 1603864
Alignment:
| Q |
106 |
atcacttgttagctttaagccaatcaaggatacccttttctgcttctgaaagcttcccctcctcctttccttgcaaacccccttctacgaactcaaagta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
1604129 |
atcacttgttagctttaagccaatcaaggatacccttttctgcttctgaaagcttcccctcctcctttgcttgcaaacccccttctatgaactcaaagta |
1604030 |
T |
|
| Q |
206 |
atccttgtaattacgcttgtaataactatcaaccctctgccacacacaaagactgtgattaaattcaatactgaataatgacatactacaacataaaatt |
305 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
1604029 |
atctttgtaattacgcttgtaattactatcaaccctctgccacacacaaaaactgtgattaaattgaatactaaat-atgacatactacaacataaaatt |
1603931 |
T |
|
| Q |
306 |
aaataccctgctttgagagcattacttacctctttgtcatttttctccttgttttcctctgttttct |
372 |
Q |
| |
|
|||||| | ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1603930 |
aaatacaccactttgagtgtgttacttacctctttgtcatttttctccttgttttcctgtgttttct |
1603864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 1604337 - 1604389
Alignment:
| Q |
175 |
cttgcaaacccccttctacgaactcaaagtaatccttgtaattacgcttgtaa |
227 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
1604337 |
cttgcaaacccccttctatgaactcaaagtaatccttgtaattacgctagtaa |
1604389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 1604229 - 1604190
Alignment:
| Q |
24 |
atgtccaattgtaaggtgtagaattgaatgtcattggagc |
63 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1604229 |
atgtccaattttaaggtgtagaattgaatgtcattggagc |
1604190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University