View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_6 (Length: 372)
Name: NF10771_low_6
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 47262202 - 47262556
Alignment:
| Q |
1 |
tattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcagaatccgtataactattcgacccgatacaaaaactcataaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262202 |
tattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcagaatccgtataactattcgacccgatacaaaaactcataaactt |
47262301 |
T |
|
| Q |
101 |
ccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccaccgtagtattcaccacactccataacgttccatcaacgatctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47262302 |
ccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatccaccgtagtattcaccacactccataacgttccatcaatgatctga |
47262401 |
T |
|
| Q |
201 |
tcaaacaccggcggcgtaagatgatcaacaccgttggctccaccgtagaaataagtagtacgtatcatatattttgcaccgcgatacacaggaatattgt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262402 |
tcaaacaccggcggcgtaggatgatcaacaccgttgactccaccgtagaaataagtagtacgtatcatatattttgcaccgcgatacacaggaatattgt |
47262501 |
T |
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| Q |
301 |
agcagtgttttttaacttggagagggaatgaacgaagggttttgagagttgggag |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262502 |
agcagtgttttttaacttggagagggaatgaacgaagggttttgagagttgggag |
47262556 |
T |
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