View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_7 (Length: 336)
Name: NF10771_low_7
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 48007571 - 48007872
Alignment:
| Q |
12 |
tcaccaccttagcttgtaaattctgattttctgttgggaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
111 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48007571 |
tcaccaccttagcttgtaaattttgattttctgttggaaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
48007670 |
T |
|
| Q |
112 |
aatagaaaatagggatatgatagctatatggtcgaccaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
211 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48007671 |
aatagaaaatagggatatgatatatatatggtcgaacaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
48007770 |
T |
|
| Q |
212 |
ctcgaatatgattcttnnnnnnngatgatgtctatggtcaaactattactttcatgcattcttggttctccttctccatctaataataatagtcaaatat |
311 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
48007771 |
ctcgaatatgattctt-aaaaaagatgatgtatatggtcaaactattactttcatgcattcttggttctccatc---------taataatagtcaaatat |
48007860 |
T |
|
| Q |
312 |
tgtgctaacatt |
323 |
Q |
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|||| ||||||| |
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| T |
48007861 |
tgtgttaacatt |
48007872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1604238 - 1604338
Alignment:
| Q |
1 |
tgtagttgcactcaccaccttagcttgtaaattctgattttctgttgggaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttg |
100 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
1604238 |
tgtagttgcactcaccacct-agcttgtaaattttgattttctgttgggaaattcggatatggtacagtttttttcttgcaaggttttgtatgaaatttg |
1604336 |
T |
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| Q |
101 |
ct |
102 |
Q |
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|| |
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| T |
1604337 |
ct |
1604338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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