View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10771_low_8 (Length: 254)
Name: NF10771_low_8
Description: NF10771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10771_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9337379 - 9337614
Alignment:
| Q |
1 |
aaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9337379 |
aaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatacgagtaaattacaaattatctatcttttac |
9337478 |
T |
|
| Q |
101 |
aaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagcgacaa |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9337479 |
aaactacacagagttgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagggacaa |
9337578 |
T |
|
| Q |
201 |
tttcaccggtttcgatctctttggccatgtaaactt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9337579 |
tttcaccggtttcgatctctttggccatgtaaactt |
9337614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29320980 - 29320745
Alignment:
| Q |
1 |
aaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttac |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29320980 |
aaaattgtttgttagcgttcatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatcaatcttttac |
29320881 |
T |
|
| Q |
101 |
aaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagcgacaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29320880 |
aaataacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagcgacaa |
29320781 |
T |
|
| Q |
201 |
tttcaccggtttcgatctctttggccatgtaaactt |
236 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |
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| T |
29320780 |
tttcaccagtttcgatctctttggccatgtaaactt |
29320745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40149889 - 40149656
Alignment:
| Q |
1 |
aaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatcttttac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40149889 |
aaaattgtttgttagcgtccatttcttattcttaaagagaagaataagaatcaaacttcaatcaaacatacgagtaaattacaaattatctatcttttac |
40149790 |
T |
|
| Q |
101 |
aaattacacagaattgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagcgacaa |
200 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40149789 |
aaactacacagagttgcacataggaatgaaatgtttgaaaatacattcatattcatactccttctcccattatccatacgtattttcttgagagcgacaa |
40149690 |
T |
|
| Q |
201 |
tttcaccggtttcgatctctttggccatgtaaac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
40149689 |
tttcaccggtttcgatctctttggccatgtaaac |
40149656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 14417253 - 14417392
Alignment:
| Q |
102 |
aattacacagaattgcacataggaatgaaatgtttgaaaatacat---tcatattcatactccttctcc--cattatccatacgtattttcttgagagcg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
14417253 |
aattacacagaattgcacataggaatgaaatgtttgaaaatacataattcatattcataccccttctctttcattatccatacgtattttcttgagagca |
14417352 |
T |
|
| Q |
197 |
acaatttcaccggtttcgatctctttggccatgtaaactt |
236 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
14417353 |
acaatttcaccggtttcgatctctttcgccatgtaaactt |
14417392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 14270856 - 14270979
Alignment:
| Q |
102 |
aattacacagaattgcacataggaatgaaatgtttgaaaatacat---tcatattcatactccttctcc--cattatccatacgtattttcttgagagcg |
196 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
14270856 |
aattacacagaattgcacatcggaatgaaatgtttgaaaatacataattcatattcataccccttctctttcattatccatacgtattttcttgagagca |
14270955 |
T |
|
| Q |
197 |
acaatttcaccggtttcgatctct |
220 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
14270956 |
acaatttcaccagtttcgatctct |
14270979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 38477200 - 38477114
Alignment:
| Q |
12 |
ttagcgtccatttcttattcttaaagagaagaataagaatcaatcttcaatcaaacatatgagtaaattacaaattatctatctttt |
98 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
38477200 |
ttagcgttcatttcttattcttaaagagaagaataagaatcaatcttcaatcaagcatacgagtaatttacaaattatctatctttt |
38477114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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