View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10772_1 (Length: 760)
Name: NF10772_1
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10772_1 |
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Alignment Details
Target: chr3 (Bit Score: 591; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 13 - 623
Target Start/End: Original strand, 31058529 - 31059139
Alignment:
| Q |
13 |
catcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058529 |
catcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatg |
31058628 |
T |
|
| Q |
113 |
aattttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaacacacataacccctgatttcagtttcac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31058629 |
aattttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgagtcattgtcaacacacataacccctgatttcagtttcac |
31058728 |
T |
|
| Q |
213 |
aactagaaattaggaatatttttcatggaaataggtatatcagtgcttgaaaattgaatttgatgtataaacagtgaaatccgtagttttataaaaagat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31058729 |
aactagaaattaggaatatttttcatggaaataggtatatcagtgcttgaaaattgaatttgatgtataaacagtgaaatccgtagttttataaaaagat |
31058828 |
T |
|
| Q |
313 |
ccaagtatgtagcttgtgacataagattttgatttgctgaagtcaacaactccacgcattcatacagtcagcacatcaacagctgttaaatcgggattaa |
412 |
Q |
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| T |
31058829 |
ccaagtatgtagcttgtgacataagattttgatttgctgaagtcaacaactccatgcattcatacagtcagcacatcaacagctgttaaatcaggattaa |
31058928 |
T |
|
| Q |
413 |
acggtccaaatttcaatgcatattttgattttagaaaaactgaaatatcaagcttgaaatctaaactgtctgatctcaatccaatgatcactgatgcgct |
512 |
Q |
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| T |
31058929 |
acggtccaaatttcaatgcatattttgattttagaaaaactgaaatatcaagcttgaaatctaaactgtctgatctcaatccaatgatcactgatgcgct |
31059028 |
T |
|
| Q |
513 |
aactacatcagatccaaatccaggttttgatgtgtctctgatgaccgcaactcaatgtatcaactcatttatcctgttttctttttaatctaagttggaa |
612 |
Q |
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| T |
31059029 |
aactacatcagatccaaatccatgttttgatgtgtctctgatgaccgcaactcgatgtatcaactcatttatcctgttttctttttaatctaagttggaa |
31059128 |
T |
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| Q |
613 |
taaactaggtg |
623 |
Q |
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| T |
31059129 |
taaactaggtg |
31059139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 31082422 - 31082591
Alignment:
| Q |
15 |
tcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatgaa |
114 |
Q |
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||||| |||||||| ||||||||||||| ||||||||| ||| ||||||||| || || || |||||||||| || || |||||||| |||||||||| |
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| T |
31082422 |
tcatcgaattgatcagctccaaagctttccaagcatggtttgtgtcctccagtgcccaaggagatacagtaaagggcaaggaagaaaacaacttcatgaa |
31082521 |
T |
|
| Q |
115 |
ttttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaa |
184 |
Q |
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| T |
31082522 |
ttttccttggctgaagacatgtctttgtgttgcatgactttaaacttgggatgtattgagacattgtcaa |
31082591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 31065374 - 31065545
Alignment:
| Q |
15 |
tcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatgaa |
114 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| || || || |||||||||| || || |||||||| |||||||||| |
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| T |
31065374 |
tcatcaaattgatcagctccaaagctttccaagcatggtttgtgtcctccagtgcccaaggagatacagtaaagggcaaggaagaaaactacttcatgaa |
31065473 |
T |
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| Q |
115 |
ttttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaaca |
186 |
Q |
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| T |
31065474 |
gttttcttggctgcagacatttctttgtgttgcatgtctttaaacttggtatgtattgagacatagtcaaca |
31065545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 681 - 737
Target Start/End: Original strand, 31059197 - 31059253
Alignment:
| Q |
681 |
tatttaccgtcagataaattacggatgacaattggaccatatgaaaccgaccagtat |
737 |
Q |
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| T |
31059197 |
tatttaccgtcagataaattacggatgacaattggaccatatgaaatcgaccagtat |
31059253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 30520558 - 30520525
Alignment:
| Q |
467 |
tgaaatctaaactgtctgatctcaatccaatgat |
500 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
30520558 |
tgaaatctagactgtctgatctcaatccaatgat |
30520525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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