View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10772_2 (Length: 700)

Name: NF10772_2
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10772_2
NF10772_2
[»] chr1 (3 HSPs)
chr1 (27-700)||(39210040-39210698)
chr1 (36-168)||(24036791-24036927)
chr1 (284-355)||(7673907-7673978)
[»] chr8 (5 HSPs)
chr8 (194-557)||(27510436-27510799)
chr8 (9-168)||(27513624-27513783)
chr8 (554-700)||(27510235-27510379)
chr8 (9-127)||(8675126-8675245)
chr8 (554-696)||(27271016-27271159)
[»] chr3 (1 HSPs)
chr3 (30-139)||(9461180-9461298)
[»] chr2 (2 HSPs)
chr2 (46-158)||(38950770-38950885)
chr2 (284-325)||(27592764-27592805)
[»] chr6 (2 HSPs)
chr6 (42-94)||(18331979-18332031)
chr6 (96-163)||(18331878-18331945)
[»] chr4 (2 HSPs)
chr4 (197-335)||(42091774-42091912)
chr4 (220-378)||(31949210-31949368)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 27 - 700
Target Start/End: Original strand, 39210040 - 39210698
Alignment:
Q  27 accttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                |||||||||||||    
T  39210040 accttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgatttttttgaa----------------ctaatttgaatat 39210123  T
Q  127 gaatagattagattccaatgttgtgagtgtagaatatatattataatggatgctccatttgatgtatacaagaatgagtttgaggtggctgtcaaaaaga 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  39210124 gaatagattagattccaatgttgtgagtgtagaatatatattataatggaggttccatttgatgtatacaagaatgactttgaggtggctgtcaaaaaga 39210223  T
Q  227 ggaacgagaaagtctattttaccgacggttggacattttttaaagaattttatcgacttttggctggtacttggatcactgtcatttttgcaaatcgaca 326  Q
    |||||| ||||||||||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  39210224 ggaacgtgaaagtctattttactgacggttggacattttt-aaagaattttatgtgcttttggctggtacttggatcactgtcatttttgcaaatcgaca 39210322  T
Q  327 cctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39210323 cctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctccacaaagaatgttgttgcagaaccatagtgctcat 39210422  T
Q  427 gcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttc---tataacacaattgttaaggagttaaccgcttctgacg 523  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  39210423 gcttacgt-aatcccttcataccatatggttcttctgcccttttacttcccactaccttcttctataacacaattgttaaggagttaaccgcttctgacg 39210521  T
Q  524 ttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaatt 623  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39210522 ttacttttggaatgttggtgagttgtatgattgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcaggctgagaaaattgaatt 39210621  T
Q  624 aactgtcattgattgcctgggaatacttgaaagttgttaacggatttttgtcatgatgaacagttgtcatgtgtttt 700  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||||||||    
T  39210622 aactgtcattgattgcctggaaatacttggaagttgtttacggatttttgtcatgatgaacggttgtcatgtgtttt 39210698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 24036927 - 24036791
Alignment:
Q  36 atacaagggaagttgatgaaactatctgcaagcc----tgatgatgaagaggttgagttttttgaattttgattgttttgaactaa-tttgaatatgaat 130  Q
    |||||||  |||||||||||||||||||||||||    ||||||||||||||||||||||||| | ||||||||||||||| |||| |||| |||| |||    
T  24036927 atacaagctaagttgatgaaactatctgcaagccatcctgatgatgaagaggttgagtttttt-agttttgattgttttgatctaaatttgtatataaat 24036829  T
Q  131 agattagattccaatgttgtgagtgtagaatatatatt 168  Q
    | || ||||| ||||||| |||||||||||||||||||    
T  24036828 aaatcagatttcaatgttttgagtgtagaatatatatt 24036791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 284 - 355
Target Start/End: Complemental strand, 7673978 - 7673907
Alignment:
Q  284 ttttggctggtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgc 355  Q
    ||||||||||||||||| ||||  | |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  7673978 ttttggctggtacttgggtcacaattattttttcaaatcgacacatttttctgtttgaagttagaaatatgc 7673907  T

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Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 194 - 557
Target Start/End: Complemental strand, 27510799 - 27510436
Alignment:
Q  194 acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | | ||||||||||    
T  27510799 acaagaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttactgacggttggacattttt-aaagaattttaatgggcttttggctg 27510701  T
Q  293 gtacttggatcactgtcatttttgcaaatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcctcaaagcactcctcc 392  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27510700 gtacttggatcactgtcatttttgaaaatcgacacctttttctgtttgaagttaggaatatacatggagatgagttggtgtatcctcaaagcactcctcc 27510601  T
Q  393 acaaagaatgttgttgcagaaccatagtgctcatgcttacgttaatccattcataccatatggtttttctgcccttttacttcccactaccttctataac 492  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  27510600 acaaagaatgttgttgcagaaccatagtgctcatgcgtacgtaaattccttcataccatatggttcttctgcccttttacttcccactaccttttataac 27510501  T
Q  493 acaattgttaaggagttaaccgcttctgacgttacttttggaatgttggtgagttgtatgattgt 557  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27510500 acaattgattaggagttaacctcttctgacgttacttttggaatgttggtgagttgtatgattgt 27510436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 27513783 - 27513624
Alignment:
Q  9 gagatgaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgtt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513783 gagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactacctgcaagcctgatgatgaagaggttgagttttttgaattttgagtgtt 27513684  T
Q  109 ttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatatt 168  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27513683 ttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtagaatatatatt 27513624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 554 - 700
Target Start/End: Complemental strand, 27510379 - 27510235
Alignment:
Q  554 ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggg-aatacttg 652  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||  |||||||    
T  27510379 ttgtctatatgcagaatttgaattggcttggcttttgtcaatctgcatttcgggctgggaaaactgaatcaactgtcattgattgcctgggctatacttg 27510280  T
Q  653 aaagttgttaacggatttttgtcatgatgaacagttgtcatgtgtttt 700  Q
     |||||||| |||||||||||||   ||||||||||||||||||||||    
T  27510279 gaagttgtttacggatttttgtc---atgaacagttgtcatgtgtttt 27510235  T

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Target: chr8; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 8675126 - 8675245
Alignment:
Q  9 gagatgaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgt 107  Q
    |||| |||||||||||||||  |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8675126 gagaagaaggtgccgaagacgattgagaatacaagggaagttgatgagactgtttgcaagcctgatgatgaagaggttgagttttttaaattttgattgt 8675225  T
Q  108 tttgaactaatttgaatatg 127  Q
    ||||| ||||||| ||||||    
T  8675226 tttgacctaatttcaatatg 8675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 554 - 696
Target Start/End: Original strand, 27271016 - 27271159
Alignment:
Q  554 ttgtctatatgcagaatttgaattggcttgacttttgtcaatctgcatttcgggctgagaaaattgaattaactgtcattgattgcctggg-aatacttg 652  Q
    |||||||| |||| |||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||   ||||||    
T  27271016 ttgtctatgtgcataatttgaattggcttggcttttgtcaatctgcatttccggctgtgaaaactgaattaactgtcattgatttcctgggctttacttg 27271115  T
Q  653 aaagttgttaacggatttttgtcatgatgaacagttgtcatgtg 696  Q
     |||||||| | ||| || |||||| |||||||| |||||||||    
T  27271116 gaagttgtttatggaattctgtcataatgaacagctgtcatgtg 27271159  T

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Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 9461180 - 9461298
Alignment:
Q  30 ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttt---------tgaattttgattgttttgaactaattt 120  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||| |||||||    
T  9461180 ttgaaaataagaaggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttttttttttgttaattttgattgttttgacctaattt 9461279  T
Q  121 gaatatgaatagattagat 139  Q
    |||||||| ||||||||||    
T  9461280 gaatatgattagattagat 9461298  T

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Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 38950885 - 38950770
Alignment:
Q  46 agttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttg------aattttgattgttttgaactaatttgaatatgaatagattagat 139  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||||||||||| ||||||||||    
T  38950885 agttgatgaaactatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagat 38950789  T
Q  140 tccaatgttgtgagtgtag 158  Q
    | ||| |||||||||||||    
T  38950788 ttcaaagttgtgagtgtag 38950770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 27592764 - 27592805
Alignment:
Q  284 ttttggctggtacttggatcactgtcatttttgcaaatcgac 325  Q
    |||||| |||| |||||| |||||||||||||||||||||||    
T  27592764 ttttggttggttcttggaccactgtcatttttgcaaatcgac 27592805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 18332031 - 18331979
Alignment:
Q  42 gggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttt 94  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18332031 gggaagttgatgaaactatctacaagcctgatgatgaagaggttgagtttttt 18331979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 18331945 - 18331878
Alignment:
Q  96 aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatat 163  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatat 18331878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 42091912 - 42091774
Alignment:
Q  197 agaatgagtttgaggtggctgtcaaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaattttatc-gacttttggctggta 295  Q
    |||||||| ||||||| |||||  |||||||||||| |||||| ||||||   || |||||| | | |||| |||||||||  | |  |||||||||||     
T  42091912 agaatgagattgaggtagctgtggaaaagaggaacgggaaagtttattttgatgatggttgggc-tgttttgaagaatttttacaggattttggctggtt 42091814  T
Q  296 cttggatcactgtcatttttgcaaatcgacacctttttct 335  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42091813 cttggatcactgtcatttttgcaaatcgacgcctttttct 42091774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 31949210 - 31949368
Alignment:
Q  220 aaaaagaggaacgagaaagtctattttaccgacggttggacattttttaaagaatttta-tcgacttttggctggtacttggatcactgtcatttttgca 318  Q
    ||||||| ||||| ||  || |||||||| || |||||||||||||| |||||  |||| | |  |||||| |||| ||||||||||  | |||||||||    
T  31949210 aaaaagaagaacgggagggtttattttactgatggttggacattttt-aaagagctttaatgggattttgggtggtgcttggatcacaattatttttgca 31949308  T
Q  319 aatcgacacctttttctgtttgaagttaggaatatgcatggagatgagttggtgtatcct 378  Q
    |||||||| ||||||||| | |  || || ||| ||||||||| | | ||||||||||||    
T  31949309 aatcgacatctttttctgatggtggtaagaaatctgcatggagtttaattggtgtatcct 31949368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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