View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10772_4 (Length: 503)
Name: NF10772_4
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10772_4 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 21 - 482
Target Start/End: Complemental strand, 28613202 - 28612733
Alignment:
| Q |
21 |
cctcaagctttgcaatcatggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcat |
120 |
Q |
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| T |
28613202 |
cctcaagctttggaatcatggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcat |
28613103 |
T |
|
| Q |
121 |
cacaaactctcaccatgtgtaatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggt-----catccattttgcatcaactgctggaa |
215 |
Q |
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| T |
28613102 |
cacaaactctcaccatgtgtcatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggtgtggtcatccattttgcatcaactgctggaa |
28613003 |
T |
|
| Q |
216 |
tcaatatgtcaatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaa |
315 |
Q |
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| T |
28613002 |
tcaatatgtcgatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaa |
28612903 |
T |
|
| Q |
316 |
cttgcaagtaagtcaaggaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaa |
415 |
Q |
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| T |
28612902 |
cttgcaagtaagtcaagaaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaa |
28612803 |
T |
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| Q |
416 |
attgt---tgttatgctataagtcatgatcaattattatcagagtctagccctagatttaatgatgatgt |
482 |
Q |
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| T |
28612802 |
attgttgttgttatgctataagtcatgatcaattattatcagagtctagccctagatttaataatgatgt |
28612733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 440
Target Start/End: Complemental strand, 28604451 - 28604043
Alignment:
| Q |
34 |
aatcatggtttgataacccacaaaaagttcaaaaaaccataggcctgtccaaccaaccccacttagaattagggtttccaaactcatcacaaactctcac |
133 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||| |||||||| | || ||| || ||||| ||||||||||| || | |||||||||| ||||||| |
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| T |
28604451 |
aatcatggtttgataaccaacaaaaagttcgaaatgccataggcttatcgaacgaaacccacatagaattagggcttgcctactcatcacatactctca- |
28604353 |
T |
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| Q |
134 |
catgtgtaatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggt-----catccattttgcatcaactgctggaatcaatatgtcaat |
228 |
Q |
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| ||| ||| || || |||| |||| |||| || || | |||||||||| ||| ||||||||||||| |||||||||||||| || || |
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| T |
28604352 |
--tttgtggtatttgcttagaaatcttttctagcgaagcgattagatcatcatggtgtcgtcattcattttgcatcaattgctggaatcaatacgttgat |
28604255 |
T |
|
| Q |
229 |
ataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagtaagt |
328 |
Q |
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| | |||||||||| |||||| |||||||| | ||||||| | |||||||||||||||||||| ||| ||||||||||||| ||| | |||||| ||| |
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| T |
28604254 |
acccatatcgatgatcataactgcttcaaactcaaatgccctgagccttcttgtaatgcagctgtagatgaagacatgattcaacaattagcaagtgagt |
28604155 |
T |
|
| Q |
329 |
caaggaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgttatgc |
428 |
Q |
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|||| ||||||||||| ||||||||||||||||| ||||| || |||||||||| | | | ||||||||||||||||||||||||| |||||||| |||| |
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| T |
28604154 |
caagaaagattaaatacgatcaatttttctttcgttcttatgttgaaaacaacaataacatgaaattgaagtggtgtcctgctccagattgttgtaatgc |
28604055 |
T |
|
| Q |
429 |
tataagtcatga |
440 |
Q |
| |
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||||||| |||| |
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| T |
28604054 |
tataagttatga |
28604043 |
T |
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