View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10772_6 (Length: 430)
Name: NF10772_6
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10772_6 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 128 - 384
Target Start/End: Original strand, 10426677 - 10426932
Alignment:
| Q |
128 |
agcaagccctgtaaattctagataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttga |
227 |
Q |
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| T |
10426677 |
agcaagctctgtaaattctagataagaccttg-aggcatgtgtatcattcaaattgatcaattccaatgtgctgaaataataaatatacaatggtgttga |
10426775 |
T |
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| Q |
228 |
taggatttggaaatatgcatcagataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat |
327 |
Q |
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| T |
10426776 |
taggatttggaaatatgcatcagataagtcttcagccgcgcaaaggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatat |
10426875 |
T |
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| Q |
328 |
ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta |
384 |
Q |
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| T |
10426876 |
ttattaagataagattagtgcatcaagtcacatgttaagaaggtagcaatgaaccta |
10426932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 10426240 - 10426336
Alignment:
| Q |
1 |
aaaacagggtggaaggataagggaaaatgggataggtgagaagaaaaggagagaataatgtggagaaccgagatactacgatgaagcgttgaattaa |
97 |
Q |
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| T |
10426240 |
aaaatagggtggaaggataagggaaaatgggataggtgagaagaaaaggagagaataatgtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 149 - 350
Target Start/End: Complemental strand, 4410938 - 4410741
Alignment:
| Q |
149 |
ataagaccttggaggcatgtgtatcattcaaattgatcaattccaatgtgctgaattaataaatatacaatggtgttgataggatttggaaatatgcatc |
248 |
Q |
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| T |
4410938 |
ataagaccttggaggcatgtgtaccattcacattgatcaattccaatgtgctgaattaattaatatacaatggtgctgataggatttgaaaatatgcatc |
4410839 |
T |
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| Q |
249 |
agataagtcttcagccgcacataggagaagctaccaaggatattttcaacttcccttacatttacgatgcagcttatatttattaagataagattagtgc |
348 |
Q |
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| T |
4410838 |
agatcagtcat----tgcacaaaggagaagctaccaaggatattttcaactttccttacatttacgatgcaacttatgtttattaagataagattagcgc |
4410743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 380
Target Start/End: Complemental strand, 4407926 - 4407898
Alignment:
| Q |
352 |
aagtcacatgttaagaaggtagcaatgaa |
380 |
Q |
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| T |
4407926 |
aagtcacatgttaagaaggtagcaatgaa |
4407898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 24819529 - 24819406
Alignment:
| Q |
1 |
aaaacagggtggaaggataagggaaaatgggatag-gtgagaagaaaaggagagaataatgtggagaaccgagatactacgatgaagcgttgaattaaaa |
99 |
Q |
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| T |
24819529 |
aaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagagaaaataatgtggagactgaacatattacgatggagcgttgaattaaaa |
24819430 |
T |
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| Q |
100 |
aggaacaaagacgaaaagaatagc |
123 |
Q |
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||| | ||| |||||||||||| |
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| T |
24819429 |
ttgaatagagaggaaaagaatagc |
24819406 |
T |
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