View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10772_8 (Length: 402)
Name: NF10772_8
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10772_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 4035315 - 4035703
Alignment:
| Q |
14 |
agaggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctgaag |
113 |
Q |
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| T |
4035315 |
agaggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggctgggtacatttgacactcctgaag |
4035414 |
T |
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| Q |
114 |
aagctgctcttgcttacgacggcgccgctcgttctcttcgtggagctaaagcaaaaaccaacttcccaccggcgccggtcgccggaggactttgtttgga |
213 |
Q |
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| T |
4035415 |
aagctgctcttgcttacgacggcgccgctcgttctcttcgtggagctaaagcaaaaaccaacttcccaccggcgccggtcgccggaggactttgtttgga |
4035514 |
T |
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| Q |
214 |
tctcaacgctccttcttctgatctccgatggccatctgtcccttcacgtggccgtgtgcttactgagtttcttcaaactggtgttctcaaggatttcaac |
313 |
Q |
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| T |
4035515 |
tctcaacgctccttcttctgatctccgatggccatctgtcccttcacgtggccgtgtgcttactgagtttcttcaaactggtgttctcaaggatttcaac |
4035614 |
T |
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| Q |
314 |
cctcctccacctccacccatcggcggggtggttggacagaggcataatgaagttactcttgctgtcgccggcagaactatggtggctga |
402 |
Q |
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| T |
4035615 |
cctcctccacctccacccatcggcggggtggttggacagaggcataatgaagttactcttgctgtcgccggcagaactatggtggctga |
4035703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 36722997 - 36722885
Alignment:
| Q |
17 |
ggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctgaagaag |
116 |
Q |
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| T |
36722997 |
ggtgtaaggaagcgaccatggggtcgattcgctgctgagattagagatccctggaagaaagctcgagtctggttggggacctttgataccgctgaagaag |
36722898 |
T |
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| Q |
117 |
ctgctcttgctta |
129 |
Q |
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| T |
36722897 |
ctgcacatgctta |
36722885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 36710131 - 36710061
Alignment:
| Q |
20 |
gttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggtt |
90 |
Q |
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| T |
36710131 |
gttagaaagcgaccatggggtcgattcgctgctgagattagagatccctggaagaaaacccgtgtatggtt |
36710061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 30412956 - 30412837
Alignment:
| Q |
26 |
aagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctgaagaagctgctcttg |
125 |
Q |
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| T |
30412956 |
aagcgaccatggggccgttacgccgccgagattcgcgatcccggtaagaaaagccgcgtctggctaggtacctttgacaccgccgaagaagctgccagag |
30412857 |
T |
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| Q |
126 |
cttacgacggcgccgctcgt |
145 |
Q |
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| T |
30412856 |
cttacgacaacgccgctcgt |
30412837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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