View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10772_9 (Length: 379)
Name: NF10772_9
Description: NF10772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10772_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 3250445 - 3250123
Alignment:
| Q |
30 |
ataacgattgttgatgttaaggactaaaaatcatcatttctaacttttgaagtatgatgaaatccaaaacaacttacatgacannnnnnnnn-acgcaag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
3250445 |
ataacgattgttgatgttaaggactaaaaatcatcatttctaacttttgaagtatgatgaaatccaaaacaacttgcatgacattttttttttacgcaag |
3250346 |
T |
|
| Q |
129 |
tataacttacatgactaaaactaacattgttatatttatagacatcaagcatatatttaaactctaataacaacacatacctaaaaaattctctcnnnnn |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3250345 |
tataacttacatgactaaaactaacattgttatatttatagacatcaagcatatatttaaactttaataacaacacatacctaaaaaattctctcaaaaa |
3250246 |
T |
|
| Q |
229 |
nnnnnnncacattcctaaaaattagaattgtgtgcattagctacattacgtcttttctatttggactaaaaggctcattacatctgttagaaactctaac |
328 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
3250245 |
aaaaa--cacatacctaaaaattagaattgtgtgcattagctacattacgtcttttctatttggactaaaaggctcattacctctgttagaaacactaac |
3250148 |
T |
|
| Q |
329 |
taaacaaatgagaattattgttaac |
353 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3250147 |
taaacaaatgagaattattgttaac |
3250123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University