View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10773_high_5 (Length: 220)
Name: NF10773_high_5
Description: NF10773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10773_high_5 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 15047815 - 15047592
Alignment:
| Q |
3 |
atcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttctaggttaaa |
102 |
Q |
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| T |
15047815 |
atcccacaaattctgcaattcttttcgtgtgaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttctaggttaaa |
15047716 |
T |
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| Q |
103 |
ttcaacgtaaggaaccaattcaagggaattgaatgtaagtaatgaatggt------tattttcaaaggaagaaaaatgttgcctgttaacaatagcaaat |
196 |
Q |
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| T |
15047715 |
ttcaacgtaaggaaccaattcaagggaattgaatgtaagtaatgaatggttattattattctcaaaggaggaaaaatgttgccggttaacaatagcaaat |
15047616 |
T |
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| Q |
197 |
gcaagggctttcaaccatgtggtg |
220 |
Q |
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| T |
15047615 |
gcaagggctttcaaccatgtggtg |
15047592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 13033772 - 13033680
Alignment:
| Q |
3 |
atcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttcta |
95 |
Q |
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| T |
13033772 |
atcccacaaactctgcaattcttttgatgtgaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttcta |
13033680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 15052893 - 15052806
Alignment:
| Q |
8 |
acaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttcta |
95 |
Q |
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| T |
15052893 |
acaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccctatatggtctttcta |
15052806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 15067097 - 15067005
Alignment:
| Q |
3 |
atcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttcta |
95 |
Q |
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| T |
15067097 |
atcccacaaattctgcaattcttttcgtgtgaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccctatctggtctttcta |
15067005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 15214344 - 15214435
Alignment:
| Q |
4 |
tcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtctttcta |
95 |
Q |
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| T |
15214344 |
tcccacaaattctgcaattcttttcgtgtgaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccctatctggtctttcta |
15214435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 15030073 - 15029993
Alignment:
| Q |
3 |
atcccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttat |
83 |
Q |
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| T |
15030073 |
atcccacaaattctgcaattcttttgaggttaaaactaacatcttctttaaggtcttcgtatttcaagaataaaatcttat |
15029993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 15751509 - 15751433
Alignment:
| Q |
14 |
tctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtct |
90 |
Q |
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| T |
15751509 |
tctgcaattcttttgacatgagaatttccattttctttaagatcttcatatttcatgaataaaaccttgtctggtct |
15751433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 15000512 - 15000442
Alignment:
| Q |
11 |
aattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaacctt |
81 |
Q |
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| T |
15000512 |
aattctgcaattcttttcacttgataattggcatcttgtttaagttcttcatagttcaagaataaaacctt |
15000442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 1626534 - 1626619
Alignment:
| Q |
5 |
cccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtct |
90 |
Q |
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| T |
1626534 |
cccaaaaactctgcaattcttttaacatgaaaatttatatcttctttaagatcttcatatttcaagaataaaatcttgtttggtct |
1626619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 1617984 - 1618069
Alignment:
| Q |
5 |
cccacaaattctgcaattcttttgatgttaaaattaacatcttctttaaggtcttcatatttcaagaataaaaccttatgtggtct |
90 |
Q |
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| T |
1617984 |
cccaaaaactctgcaattcttttcacatgaaaatttatatcttctttaagatcttcatattgcaagaataaaatcttgtttggtct |
1618069 |
T |
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