View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10773_low_2 (Length: 427)
Name: NF10773_low_2
Description: NF10773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10773_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 408
Target Start/End: Original strand, 39562017 - 39562416
Alignment:
| Q |
2 |
gtggccgtattattgcataaaaaagacccttcattttgggatggtgctgttttcgtggcaccaatgtgtaagatatcagagaaggtgaagccacatcgtg |
101 |
Q |
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| T |
39562017 |
gtggccgtattattgcataaaaaagacccttcattttgggatggtgctgttttcgtggcaccaatgtgtaagatatcagagaaggtgaagccacatcgtg |
39562116 |
T |
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| Q |
102 |
ttgctgttagcatgttgtcgggattggaacatatttttcccaagtggaaaatagttccgacaaaggatgtcatcgattcagccttcaaagatcacaccaa |
201 |
Q |
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| T |
39562117 |
ttgctgttagcatgttgtcgggattggaacatatttttcccaagtggaaaatagttccgacaaaggatgtcatcgattcagccttcaaagatcacaccaa |
39562216 |
T |
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| Q |
202 |
acgggaaaaggtgacgcttgtgtcnnnnnnncccctatagttgatgtttaatgtttttgttctgccagttgattatgtgnnnnnnnnaatgatgataatg |
301 |
Q |
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| T |
39562217 |
acgggaaatggtgacgcttatgtctttttttcccctatagttgatgtttaatgtttttgttcagccagttgattatgtgttt-------tttttttaatg |
39562309 |
T |
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| Q |
302 |
atgatgattgcagataaggaaaaacaagttgatatatcaggacaagccaaggttaaaaacagcattggaactgctgagaactagtttgagtgttgaaacc |
401 |
Q |
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| T |
39562310 |
atgatgattacagataaggaaaaacaagttgatatatcaggacaagccaaggttaaaaacagcattggaactgctgagaactagtttgagtgttgaaacc |
39562409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 44348889 - 44348833
Alignment:
| Q |
309 |
ttgcagataaggaaaaacaagttgatatatcaggacaagccaaggttaaaaacagca |
365 |
Q |
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| T |
44348889 |
ttgcagataaggaaaaacaagttgatataccaggacaagcccaggttaaaaacagca |
44348833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 44349089 - 44349017
Alignment:
| Q |
143 |
aagtggaaaatagttccgacaaaggatgtcatcgattcagccttcaaagatcacaccaaacgggaaaaggtga |
215 |
Q |
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| T |
44349089 |
aagtggaagatagttcccacaaaggatgtcatcaatttcgctttcaaagatccggccaaacgagaaagggtga |
44349017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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