View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10773_low_4 (Length: 274)
Name: NF10773_low_4
Description: NF10773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10773_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 14001276 - 14001036
Alignment:
| Q |
1 |
accttgtttccccaccaaaatcagcccacgtagttctgaaagaaatgcatgacatatgacatatcacgacttgacaatatagtttaaatgtaacaaaaat |
100 |
Q |
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| T |
14001276 |
accttgtttccccaccaaaatcagcccacatagttctgaaagaaatgcataacatatgacatatcacgacttgacaatatagtttaaatgtaacaaaaat |
14001177 |
T |
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| Q |
101 |
caatcactagcaatgatgaaaacatgcaagatgaaatttttaaggaatcaaacagcaatgatatagcatcattcttattacaaaaaagtatgaacaaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14001176 |
caatcactagcaatgatgaaaacatgcaagatgaaatttttaaggaatcaaacagcaatgatatagcatcattcttattac--------------aaaac |
14001091 |
T |
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| Q |
201 |
atcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctat |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14001090 |
atcttctcatactccccactctgcagtttaacaacctcctccttaaacatcctat |
14001036 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 1473263 - 1473234
Alignment:
| Q |
100 |
tcaatcactagcaatgatgaaaacatgcaa |
129 |
Q |
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| T |
1473263 |
tcaatcactagcaatgatgaaaacatgcaa |
1473234 |
T |
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