View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10773_low_6 (Length: 247)
Name: NF10773_low_6
Description: NF10773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10773_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1748679 - 1748437
Alignment:
| Q |
1 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggctaagtcatttgcattgtcgcaaaccatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748679 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggctaagtcatttgcattgtcgcaaaccatgaag |
1748580 |
T |
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| Q |
101 |
atctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaatatgaatgagcannnnnnnngcaaattgactgtaatcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
1748579 |
atctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgtttgaccaatatgaatgagcattttttttgcaaattgactgtaatcttaa |
1748480 |
T |
|
| Q |
201 |
gagtttgacaaattaaattattgtttttgtactgcctttgctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1748479 |
gagtttgacaaattaaattattgtttttgtactgcctttgctt |
1748437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 20686615 - 20686739
Alignment:
| Q |
1 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggctaagtcatttgcattgtcgcaaaccatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20686615 |
gcatgtgctacttcagcaggctctaccacactagctttagttgtcgttgttaatcaaattggtggtggctaagtcatttgcattgtcgcaaaccatgaag |
20686714 |
T |
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| Q |
101 |
atctaagggcctaattcaatttcat |
125 |
Q |
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| T |
20686715 |
atctaagggcctaattcagtttcat |
20686739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 20686772 - 20686835
Alignment:
| Q |
180 |
gcaaattgactgtaatcttaagagtttgacaaattaaattattgtttttgtactgcctttgctt |
243 |
Q |
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|||||||||||| |||||||||||| | || |||||||||||||||||| |||| ||||||||| |
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| T |
20686772 |
gcaaattgactgcaatcttaagagtctaacgaattaaattattgtttttatactacctttgctt |
20686835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 42383588 - 42383346
Alignment:
| Q |
1 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtggctaagtcatttgcattgtcgcaaaccatgaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42383588 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgctgttaatcaaattagtggtggctaagtcatttgcattgtcgtaaaccatgaag |
42383489 |
T |
|
| Q |
101 |
atctaagggcctaattcaatttcatggttggaaaagatcaaataccaatgttagaccaatatgaatgagcannnnnnnngcaaattgactgtaatcttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42383488 |
atctaagggcctaattcaatttcatggttggaaaagaacaaataccaatgttagaccaatatgaatgagcattttttttgcaaattgactgtaatcttaa |
42383389 |
T |
|
| Q |
201 |
gagtttgacaaattaaattattgtttttgtactgcctttgctt |
243 |
Q |
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| T |
42383388 |
gagtttgacaaattaaattattgtttttgtactgcctttgctt |
42383346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21988992 - 21988926
Alignment:
| Q |
1 |
gcatgtgctacttcagcaggctctaccacactagctttagttgttgttgttaatcaaattagtggtg |
67 |
Q |
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|||| |||||||||||| | | |||| |||||| ||||||||| |||||||||||||| | |||||| |
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| T |
21988992 |
gcatatgctacttcagcggacactacgacactaactttagttgctgttgttaatcaaactggtggtg |
21988926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 8944222 - 8944167
Alignment:
| Q |
28 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
80 |
Q |
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||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
8944222 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
8944167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 26887437 - 26887492
Alignment:
| Q |
28 |
acactagctttagttgttgttgttaatcaaattagtgg---tggctaagtcatttg |
80 |
Q |
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||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
26887437 |
acactagcttttgttgctgttgttaatcaaattggtggtgatggctaagtcatttg |
26887492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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