View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10774_3 (Length: 420)
Name: NF10774_3
Description: NF10774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10774_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 29 - 411
Target Start/End: Original strand, 24494848 - 24495230
Alignment:
| Q |
29 |
agctctagcatccgcatctgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaat |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494848 |
agctctagcatccgcatctgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaat |
24494947 |
T |
|
| Q |
129 |
ctcggtgccacttatctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaa |
228 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494948 |
cttggtgccacttatctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaa |
24495047 |
T |
|
| Q |
229 |
agattcgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagatagg |
328 |
Q |
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|
||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495048 |
agattcgggttcaacatgtttccactatagatcatctatcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagatagg |
24495147 |
T |
|
| Q |
329 |
cgtatctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495148 |
cgtatctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
24495230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 24491623 - 24491672
Alignment:
| Q |
362 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491623 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
24491672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 401
Target Start/End: Original strand, 2810031 - 2810071
Alignment:
| Q |
361 |
gtgttaaggttacaggaccaaggcttttaaattaagagata |
401 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |
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| T |
2810031 |
gtgttaaggttacaagaccaaggcttttaaattaagagata |
2810071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 42 - 401
Target Start/End: Complemental strand, 18557131 - 18556772
Alignment:
| Q |
42 |
gcatctgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaatctcggtgccactt |
141 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18557131 |
gcatccgcagaagttctctggttgtcatcacttctctctgaacttcatgttagtttacccactattcctaccatctactgtgacaatctcggtgccactt |
18557032 |
T |
|
| Q |
142 |
atctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaaagattcgggttca |
241 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18557031 |
atctcactgtcaatcccctcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtcagaaataaaaagattcgggttca |
18556932 |
T |
|
| Q |
242 |
acatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatctgacggt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18556931 |
acatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagataggcgtatatgacggt |
18556832 |
T |
|
| Q |
342 |
acccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagata |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556831 |
acccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaattaagagata |
18556772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 29 - 393
Target Start/End: Original strand, 86313 - 86677
Alignment:
| Q |
29 |
agctctagcatccgcatctgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttacccactattcctaccatctactgtgacaat |
128 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
86313 |
agctctagcatacgcatccgcagaagttctctggttgtcatcacttctctctgaacttcatgtcagtttaccaactattcctaccatctactgtgacaat |
86412 |
T |
|
| Q |
129 |
ctcggtgccacttatctcactgtcaatcccgtcttccatagtcgcatgaagcacattgccatagatattcattttgtcagagatcatgtgagaaataaaa |
228 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
86413 |
ctcggtgccacgtatctcactatcaatcccgtcttccatagtcgcatgaagcatactgccatagatattcattttgttagagatcatgtcagaaataaaa |
86512 |
T |
|
| Q |
229 |
agattcgggttcaacatgtttccactaaagatcagctagcagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagatagg |
328 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86513 |
agattcgggttcaacatgtttccactacagatcagctaacagattgcctcaccaaacctctgtctaggcaacgtcatcaagatcttcgtttcaagatagg |
86612 |
T |
|
| Q |
329 |
cgtatctgacggtacccctatcttgcgggggcgtgttaaggttacaggaccaaggcttttaaatt |
393 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
86613 |
cgtatctgacggtacccctatcttgcaggggcgtgttaaggttacaggaccaaggcttttaaatt |
86677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 24358936 - 24358985
Alignment:
| Q |
362 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
411 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358936 |
tgttaaggttacaggaccaaggcttttaaattaagagatactagtattat |
24358985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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