View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10774_4 (Length: 373)
Name: NF10774_4
Description: NF10774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10774_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 39981534 - 39981894
Alignment:
| Q |
13 |
tgaaactttgattataagtatagagtaatttcgaagtgtttctttggattcaattgtaggattgagtggagtagcaaaggcctatgctgagatgcttttt |
112 |
Q |
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| T |
39981534 |
tgaaactttgattataagtatagagtaatttctaagtgtttctttggattcaattgtaggattgaatgaagagtcaaaggcctatgctgagatgcttttt |
39981633 |
T |
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| Q |
113 |
gatactcttgctcggcagagagggattcaaggaggttcgattaacaagatccagtttagggagttctgggactgtatttcagaccaaagctttgatacta |
212 |
Q |
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| T |
39981634 |
gatactcttgctcggcagagagggattcaaggaggttcgattaacaagatccagtttagggagttctgggactgtatttcagaccaaagctttgatacta |
39981733 |
T |
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| Q |
213 |
ggctcaaaatattctttgacatgtaattctttgtttagttaatgtaagcgtcaaatatttgttgaatgctccataaacatatcaccaacattgattttga |
312 |
Q |
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| T |
39981734 |
ggctcaaaatattctttgacatgtaattctttgtttagttaatgtaagcgtcaaatatttgttgaatgctccataaaaatatcaccaacattgattttga |
39981833 |
T |
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| Q |
313 |
ttacagggttgacaaagatgcagatggaagaatcactgaggaagagataaaaaatgtatgg |
373 |
Q |
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| T |
39981834 |
ttacagggttgacaaagatgcagatggaagaatcaccgaggaagagataaaaaatgtatgg |
39981894 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 44883791 - 44883831
Alignment:
| Q |
205 |
tgatactaggctcaaaatattctttgacatgtaattctttg |
245 |
Q |
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| T |
44883791 |
tgatactaggctcaaaacattctttgacatgtgattatttg |
44883831 |
T |
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