View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10774_low_2 (Length: 242)
Name: NF10774_low_2
Description: NF10774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10774_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39078021 - 39077903
Alignment:
| Q |
1 |
actatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttagag |
100 |
Q |
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| T |
39078021 |
actatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttagag |
39077922 |
T |
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| Q |
101 |
tactatattgctattacat |
119 |
Q |
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| T |
39077921 |
tactatattgctattacat |
39077903 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 39077873 - 39077791
Alignment:
| Q |
143 |
aggatcaatataagtggtagaattaagggttattttcagcttcaga-aaaagtatccacatgaagaaattctataagaaatcc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39077873 |
aggatcaatataagtggtagaattaagggttattttcagcttcagaaaaaagtatccacatgaagaaattctataagaaatcc |
39077791 |
T |
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