View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10774_low_3 (Length: 218)
Name: NF10774_low_3
Description: NF10774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10774_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 1503171 - 1503359
Alignment:
| Q |
19 |
atttcctctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtnnnnnnnnnnnncctttttaattaactcacttgnnnn |
118 |
Q |
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| T |
1503171 |
atttcccctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtaaaaaaaaaaa-ccttttcaattaactcacttgtttt |
1503269 |
T |
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| Q |
119 |
nnnnnnnnnnnaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatgc |
208 |
Q |
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| T |
1503270 |
tcattttttttaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatgc |
1503359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 1508547 - 1508623
Alignment:
| Q |
130 |
aaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatg |
207 |
Q |
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||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||| | ||||||||||||||||| |
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| T |
1508547 |
aaccttttcctaacaaagcttt-atttgttcaccaaatttacaagctatcataaattgaactttattatttccctatg |
1508623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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