View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10774_low_4 (Length: 209)
Name: NF10774_low_4
Description: NF10774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10774_low_4 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 13397 - 13579
Alignment:
| Q |
9 |
gaagcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
108 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13397 |
gaagcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
13496 |
T |
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| Q |
109 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
191 |
Q |
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| T |
13497 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
13579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 19077 - 19259
Alignment:
| Q |
9 |
gaagcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
108 |
Q |
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| T |
19077 |
gaagcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
19176 |
T |
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| Q |
109 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
191 |
Q |
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| T |
19177 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
19259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 1293197 - 1293015
Alignment:
| Q |
9 |
gaagcaaaggcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
108 |
Q |
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| T |
1293197 |
gaagcaaaagcagcataataagggttaggcaatttatctttttgagaaatgtttccttgtcttttcatttgtgcaaattcaatatcatattgtgaataga |
1293098 |
T |
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| Q |
109 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
191 |
Q |
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| T |
1293097 |
cagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaattccagttagaatcattgtcttaacatct |
1293015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 162
Target Start/End: Original strand, 44635548 - 44635642
Alignment:
| Q |
68 |
tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagcaa |
162 |
Q |
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| T |
44635548 |
tctttttaattgagcaatttcaatgtcaagttgtgaataaacagatacaaactcacctattgccatgctacatgcaccagctacaagtccagcaa |
44635642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 12281757 - 12281674
Alignment:
| Q |
68 |
tcttttcatttgtgcaaattcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctac |
151 |
Q |
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| T |
12281757 |
tcttttcatttgagcaacttcaatgtctaattgtgagtacacagagacaaattcacctattgccatgctgcatgcaccggctac |
12281674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 37742418 - 37742345
Alignment:
| Q |
87 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
160 |
Q |
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| T |
37742418 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagc |
37742345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 37749488 - 37749415
Alignment:
| Q |
87 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
160 |
Q |
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| T |
37749488 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcaccagctactaaaccagc |
37749415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 37752300 - 37752373
Alignment:
| Q |
87 |
tcaatatcatattgtgaatagacagacacaaattcaccaattgccatgctacatgcaccagctacaagaccagc |
160 |
Q |
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| T |
37752300 |
tcaatgtcatattgagtataaacagaaacaaactcaccaattgccatgctacaagcacctgctactaaaccagc |
37752373 |
T |
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