View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10775_high_1 (Length: 372)
Name: NF10775_high_1
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_high_1 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0205 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 21179054 - 21178683
Alignment:
| Q |
1 |
tgagattagatgatatccattttgtaatattctatttaagatattagtttttatgcatctataatgtaaaattctttacacatgcatttaatttaatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21179054 |
tgagattagatgatatccattttgtaatattctatttaagatattagtttttatgcatctatgatgtaaaattctttacacatgcatttaatttaatata |
21178955 |
T |
|
| Q |
101 |
agggtgcatttgacctgcaaaagaatgaaacaaaggataagacaactcttggtgtatagtatatgaattgtaaaactgatttaaggacaagataaattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| ||||||| |
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| T |
21178954 |
agggtgcatttgacctgcaaaagaatgaaacacaagataagacaactcttgatgtataatgtttgaattgtaaaactgatttaaggacaagacaaattgg |
21178855 |
T |
|
| Q |
201 |
aggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaacttttatttctctatagctgcgtgtctttacactaggtgttcca |
300 |
Q |
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|||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178854 |
aggtaagggataacacaaaaactgaaatttgtgtcgttcgttaaaccacaacacaacttttatttctctatagctgcgtgtctttacactaggtgttcca |
21178755 |
T |
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| Q |
301 |
ctcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatcttgac |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21178754 |
ttcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaaagtatccatcttgac |
21178683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 258 - 372
Target Start/End: Original strand, 2776 - 2890
Alignment:
| Q |
258 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2776 |
ttttatttctctatagctgcgtgtctttacactaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
2875 |
T |
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| Q |
358 |
agtatccatcttgac |
372 |
Q |
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||||||||||||||| |
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| T |
2876 |
agtatccatcttgac |
2890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 258 - 370
Target Start/End: Original strand, 28360643 - 28360755
Alignment:
| Q |
258 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
357 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28360643 |
ttttatttctctatagctgcgtgtctttacactagatgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
28360742 |
T |
|
| Q |
358 |
agtatccatcttg |
370 |
Q |
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||||||||||||| |
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| T |
28360743 |
agtatccatcttg |
28360755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 258 - 372
Target Start/End: Original strand, 18273870 - 18273984
Alignment:
| Q |
258 |
ttttatttctctatagctgcgtgtctttacactaggtgttccactcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
357 |
Q |
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||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18273870 |
ttttatttctctatagctgtgtgtctttaatctaggtgttccattcaattttaattgtttgagaacactattgccgtggtttcttttcttcctaattcaa |
18273969 |
T |
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| Q |
358 |
agtatccatcttgac |
372 |
Q |
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||||||||||||||| |
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| T |
18273970 |
agtatccatcttgac |
18273984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 37695503 - 37695573
Alignment:
| Q |
191 |
gataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
261 |
Q |
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|||||||||||||||| || || ||||||||||| |||| ||||| || | || |||||||||||||||| |
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| T |
37695503 |
gataaattggaggtaagagacaagacaaaaactgatatttttgtccctcatcaaaccacaacacaactttt |
37695573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 41934740 - 41934632
Alignment:
| Q |
153 |
tgtatagtatatgaattgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaac |
252 |
Q |
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|||||||| | ||| |||||||||||||| | ||| ||||||| |||| | ||| || || ||||||||||||||| ||| |||| ||| ||||||| |
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| T |
41934740 |
tgtatagtgtgtgatttgtaaaactgattaagggatgagataaactggatgcaaaagacaagacaaaaactgaaattcttgtacttcactaaaccacaac |
41934641 |
T |
|
| Q |
253 |
acaactttt |
261 |
Q |
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||||||||| |
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| T |
41934640 |
acaactttt |
41934632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 39792956 - 39792869
Alignment:
| Q |
172 |
aaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactt |
259 |
Q |
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||||||| |||| |||||||||||||||||| ||| |||| ||||||| ||||||| |||||||| || |||||||||||||| |
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| T |
39792956 |
aaaactgttttagggacaagataaattggagacaaaagatatgacaaaaattgaaattcttgtccttcaccaaaccacaacacaactt |
39792869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 261
Target Start/End: Original strand, 1595 - 1688
Alignment:
| Q |
168 |
ttgtaaaactgatttaaggacaagataaattggaggtaaaggataatacaaaaactgaaatttgtgtccttcgttaatccacaacacaactttt |
261 |
Q |
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||||||||||| || ||||| | || ||| |||||| || ||| || |||||||||||||||| ||||| || || |||||||||||||||| |
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| T |
1595 |
ttgtaaaactgtttcaaggataggacaaactggaggcaagggacaagacaaaaactgaaatttttgtccctcaccaaaccacaacacaactttt |
1688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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