View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10775_low_1 (Length: 618)
Name: NF10775_low_1
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 601
Target Start/End: Original strand, 21179048 - 21179648
Alignment:
| Q |
1 |
aatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccactaatcctttcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179048 |
aatctcatcacatatctacattctaatccaaacaatgtagtacaatactattacattcatacaacttgattctatctcaataccactaatcctttcaatt |
21179147 |
T |
|
| Q |
101 |
agcgattggaataaactcattctttattaactcaatttgacgactaaaacacccaagaacacttggatgggatgataagatatttcttctaacttaacca |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179148 |
agcgattggaataaactcattctttcttaactcaatttgacgactaaaacactcaagagcacttggatgggatgataagatatttcttctaacttaacca |
21179247 |
T |
|
| Q |
201 |
gaggtcatgggttctaatccatccatttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcattcactacctgacttgagtgattagtct |
300 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21179248 |
gaggtcatgggttctaatccatccctttaaatgtagcagttgccttaaatctcttgaaggagagctttgtcatccactacctgacttgagtgattagtct |
21179347 |
T |
|
| Q |
301 |
atgcagttgtgtggagatcatatccgattcacacnnnnnnntcgatgactaaaacacaacattggaagataataaaagaaagaaaaatatagtagcatgg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21179348 |
atgcagttgtgtggagatcatatccgattcacacaaaaaaatcgatgactaaaacacaacattggaagataaaaaaagaaagaaaaatatagtagcatgg |
21179447 |
T |
|
| Q |
401 |
acataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgcttcaactagtgaatttg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179448 |
acataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgcttcaactagtgaatttg |
21179547 |
T |
|
| Q |
501 |
tgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtggctttggactaggaag |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21179548 |
tgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtggctttggactaagaag |
21179647 |
T |
|
| Q |
601 |
g |
601 |
Q |
| |
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| |
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| T |
21179648 |
g |
21179648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 453 - 601
Target Start/End: Complemental strand, 23190528 - 23190379
Alignment:
| Q |
453 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
551 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
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| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
|
| Q |
552 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagg |
601 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||| | |||||| |
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| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagg |
23190379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 592
Target Start/End: Complemental strand, 23183142 - 23183012
Alignment:
| Q |
463 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
561 |
Q |
| |
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||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
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| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
|
| Q |
562 |
tctcacattttgaaatgccggtggctttgga |
592 |
Q |
| |
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|||||||||||||||||| |||||||||||| |
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| T |
23183042 |
tctcacattttgaaatgctggtggctttgga |
23183012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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