View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10775_low_13 (Length: 249)
Name: NF10775_low_13
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 39998144 - 39997916
Alignment:
| Q |
15 |
acttattacttacaaggaaattgagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39998144 |
acttattacttacaaggaaattgagggccctcctaagcaaaatttactttaagcaatggccttcaaaagattcgatttccactgtccaagtgtctctctt |
39998045 |
T |
|
| Q |
115 |
ggattcctggaaattggtcattctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39998044 |
ggattcctggaaattggtcattctctttagtacatgatactcctttctaaagtaattgatttgctatgtgcattattaagatgacactagaaaaatggta |
39997945 |
T |
|
| Q |
215 |
gtatataagatgttgttaaattcatctca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39997944 |
gtatataagatgttgttaaattcatctca |
39997916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University