View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10775_low_15 (Length: 228)
Name: NF10775_low_15
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 35295058 - 35294849
Alignment:
| Q |
1 |
gatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagattatagagtcaatgaaaggagaatgaggaggtagaaagc |
100 |
Q |
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| T |
35295058 |
gatagggcgagataaagatcctttttggtaggaactttgacaagggaaggagattgtaagattatagagtcaatgaaaggagaatgaggaggtagaaagc |
35294959 |
T |
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| Q |
101 |
gatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggc |
200 |
Q |
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| T |
35294958 |
gatcccagacatcgtcggagttggcagcagaatggaaagttttggaaacgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggc |
35294859 |
T |
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| Q |
201 |
aatgcaccct |
210 |
Q |
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|||||||||| |
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| T |
35294858 |
aatgcaccct |
35294849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 35265684 - 35265756
Alignment:
| Q |
134 |
ggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgca |
206 |
Q |
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| T |
35265684 |
ggaaagtctttgaaacgacggagagtctgccggcgtcaactggagttgtacgagagactatggtggcaatgca |
35265756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 206
Target Start/End: Original strand, 45527097 - 45527209
Alignment:
| Q |
94 |
agaaagcgatcccagacatcgtcggagttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagta |
193 |
Q |
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| T |
45527097 |
agaaagtgattccagacggcatcggaatcggcggcagaaaggaaagtcttcgaaacgacggagagtctgccggcgtcaacaggagtcgtacgtgacagta |
45527196 |
T |
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| Q |
194 |
tggtggcaatgca |
206 |
Q |
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| T |
45527197 |
tggaggaaatgca |
45527209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 35249955 - 35250017
Alignment:
| Q |
145 |
gaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcac |
207 |
Q |
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| T |
35249955 |
gaaacgagggagagtctgacggcgtcaacgggagtcgttcgagagagtatggcggcaatgcac |
35250017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 207
Target Start/End: Original strand, 38633791 - 38633877
Alignment:
| Q |
121 |
ttggcagcagaatggaaagttttggaaatgagggagagttttccggcgtcaacgggagttgtacgagacagtatggtggcaatgcac |
207 |
Q |
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| T |
38633791 |
ttggcggcagaatggaatgtcttacaaacgagggagagtcttcccgcgtcaaccggagtcgtacgagacagtataatggcaatgcac |
38633877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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