View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10775_low_3 (Length: 400)
Name: NF10775_low_3
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_low_3 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 14180270 - 14180669
Alignment:
| Q |
1 |
tgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattactcctatctcttttaattttcgtgattatcattcaacacaa |
100 |
Q |
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| T |
14180270 |
tgtattaattttctatgtaattagatcagagtacttcttgttaattttaatcaatattattcctatctcttttaattttcgtgattatcattcaacacaa |
14180369 |
T |
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| Q |
101 |
attattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgacatatataattaaactaaatatctctt |
200 |
Q |
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| T |
14180370 |
attattgacacattattttcaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgacatatataattaaactaaatatctctt |
14180469 |
T |
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| Q |
201 |
taattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgttgtgattcaggaaagaatcttgcaagatg |
300 |
Q |
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| T |
14180470 |
taattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatgttgtgattcaggaaagaatcttgcaagatg |
14180569 |
T |
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| Q |
301 |
aaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccaccttttgaatttgaatctggatttgtatatgcacatacattat |
400 |
Q |
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| T |
14180570 |
aaaacatgaatttatccaactgggtaagaatatttactcctactaatgttattaccaccttttgaatttgaatctggatttgtatatgcacatacattat |
14180669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 95571 - 95345
Alignment:
| Q |
75 |
attttcgtgattatcattcaacacaaattattgacacattatttttaatacagaatgagctcatgcaacaacaaatggagaatctccaaaggaaggtgac |
174 |
Q |
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| T |
95571 |
attttcatgactatccttcaacacaaattattgacacattatttttaatgcagaatgagctcatgcagcagcaaattgataatatgatcaggaaggtgac |
95472 |
T |
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| Q |
175 |
atatataattaaactaaatatctctttaattaacatataggtactcacctatatcattgatcattaatagacacatcattaataattgtatatatg---t |
271 |
Q |
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| T |
95471 |
atatataattaaactaaccctctctttagtta--------------------atcattgactattaatagacacatgatccataattgtatatatgttat |
95392 |
T |
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| Q |
272 |
tgtgattcaggaaagaatcttgcaagatgaaaacatgaatttatcca |
318 |
Q |
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| T |
95391 |
tgtgattcaggaaagaatcttgcaagatgaaaatatcaatttatcca |
95345 |
T |
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