View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10775_low_7 (Length: 256)
Name: NF10775_low_7
Description: NF10775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10775_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 46998143 - 46997903
Alignment:
| Q |
14 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998143 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt |
46998044 |
T |
|
| Q |
114 |
gtattggtgatggaactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998043 |
gtattggtgatggaactggttattggaatttctttaactcattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctat |
46997944 |
T |
|
| Q |
214 |
tcacaataaatggtttccagaaggttatggtccaatcatca |
254 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
46997943 |
tcacaatagatggtttccagaaggttatggtccaatcatca |
46997903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 47001835 - 47001603
Alignment:
| Q |
14 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt |
113 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
47001835 |
cacagagcagttaaccatgatggtcacaccatgtctttgttgtctattcaagtcactgaattattggatggtgttttcataggttgttccatgaatcatt |
47001736 |
T |
|
| Q |
114 |
gtattggtgatggaactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctac |
213 |
Q |
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|||||||||||||||| | ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47001735 |
gtattggtgatggaacagcttattggaatttcttcaacacattttcggagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctat |
47001636 |
T |
|
| Q |
214 |
tcacaataaatggtttccagaaggttatggtcc |
246 |
Q |
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|||||| | |||||||||||||||||||||||| |
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| T |
47001635 |
tcacaaaagatggtttccagaaggttatggtcc |
47001603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 46975075 - 46974838
Alignment:
| Q |
19 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtatt |
118 |
Q |
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|||||||| ||||||||| || ||||||||||| || | |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46975075 |
agcagtcagccatgatggtcataccatgtctttattaactattcaagtaactgaattattggatggtgtttttataggttgttccatgaatcattgtata |
46974976 |
T |
|
| Q |
119 |
ggtgatggaactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcaca |
218 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||| |
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| T |
46974975 |
ggtgatgggactggttattggaatttctttaactcattttctgagatatttcaaaatgatattcatgttcttgttccgatttcacatcaacctatccaca |
46974876 |
T |
|
| Q |
219 |
ataaatggtttccagaaggttatggtccaatcatcaac |
256 |
Q |
| |
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||| |||||||||| ||||||||||||| || |||||| |
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| T |
46974875 |
atagatggtttccacaaggttatggtccgattatcaac |
46974838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 46981062 - 46980827
Alignment:
| Q |
19 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtatt |
118 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||| | ||| ||||||| || ||||||||||||||||||||| || |
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| T |
46981062 |
agcagtcaaccatgatggtcataccatgtctttgttgtctattcaagtcactgaattagtagatggtgttttcattggttgttccatgaatcattgtctt |
46980963 |
T |
|
| Q |
119 |
ggtgatggaactggttattggaatttctttaacttattttctgagatatttcaaaatgatgttcatgttcctgttccgatttcacataaacctactcaca |
218 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||| || | | |||| ||||||||| |||||| |||| |
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| T |
46980962 |
tgtgatggaacagcttattggaatttcttcaacacattttctgagatatttcaaaatgatgttcctgctgc--ttcccatttcacatcaacctatccaca |
46980865 |
T |
|
| Q |
219 |
ataaatggtttccagaaggttatggtccaatcatcaac |
256 |
Q |
| |
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| | |||||||||| |||||||||||||||| |||||| |
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| T |
46980864 |
agagatggtttccacaaggttatggtccaattatcaac |
46980827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 46995895 - 46995641
Alignment:
| Q |
14 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||| || |
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| T |
46995895 |
cacagagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagtcactgaattattagacggtgttttcataggttgttccatgaaccacg |
46995796 |
T |
|
| Q |
114 |
gtattggtgatggaactggttattggaatttctttaacttattttctgagatatttcaaaa------------tgatgttcatgttcctgttccgatttc |
201 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
46995795 |
ctgttggtgatggaactgcttattggaatttctttaatacactttctgagatatttcaaaaggttgttgatgttgatgttcatattcctgttcctatttc |
46995696 |
T |
|
| Q |
202 |
acataaacctactcacaataaatggtttccagaaggttatggtccaatcatcaac |
256 |
Q |
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||| |||||| |||||||| ||||||||| ||||| ||||||||||| |||||| |
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| T |
46995695 |
acaccaacctattcacaatagatggtttcctgaaggctatggtccaattatcaac |
46995641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 46955972 - 46955842
Alignment:
| Q |
17 |
agagcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgta |
116 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| | ||| | ||||||||||| || |||||| |||| ||||||| ||||||||||||||||| ||||||| |
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| T |
46955972 |
agagcaatcaatcatgatggtcacaccatgccgttgctatccattcaagtcacggaattaggggatggtgttttcataggttgttccatgaaccattgta |
46955873 |
T |
|
| Q |
117 |
ttggtgatggaactggttattggaatttctt |
147 |
Q |
| |
|
|||||||||| ||| || |||||||||||| |
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| T |
46955872 |
ttggtgatgggacttctttttggaatttctt |
46955842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 46951633 - 46951502
Alignment:
| Q |
19 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtatt |
118 |
Q |
| |
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|||| ||||||| || || ||||||||| | ||||| ||||| ||||| ||||| || | ||| ||||||| ||||||||||| |||||||| | |||| |
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| T |
46951633 |
agcaatcaaccacgacggtcacaccatgccgttgttatccatccaagtcactgagctagtagatggtgttttcataggttgttctatgaatcactatatt |
46951534 |
T |
|
| Q |
119 |
ggtgatggaactggttattggaatttctttaa |
150 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
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|
| T |
46951533 |
ggtgatggaacttcttattggaatttctttaa |
46951502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 46958826 - 46958673
Alignment:
| Q |
19 |
agcagtcaaccatgatggacacaccatgtctttgttgtccattcaagttactgaattattggatagtgtttttataggttgttccatgaatcattgtatt |
118 |
Q |
| |
|
|||| ||||||| || || ||||||||| | ||||| || |||||||| || || || ||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
46958826 |
agcaatcaaccacgacggtcacaccatgccattgttatcaattcaagtcacagagctagtggatggtgttttcataggttgttccctgaatcattgtatt |
46958727 |
T |
|
| Q |
119 |
ggtgatggaactggttattggaatttctttaacttattttctgagatatttcaa |
172 |
Q |
| |
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|||||||| || || |||||||| ||||| ||| ||||||||||||||| |
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|
| T |
46958726 |
ggtgatggtacctctttctggaatttttttaatatatggtctgagatatttcaa |
46958673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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