View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10776_low_4 (Length: 318)
Name: NF10776_low_4
Description: NF10776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10776_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 31652851 - 31653168
Alignment:
| Q |
1 |
gacaggaacaacaagattctatggctaaacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaagaaaaag |
100 |
Q |
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| T |
31652851 |
gacaggaacaacaagattctatggctatacagaaaaatgaggacatggtaaggaataggaaatcatatatccatcatttcacttttcagaaaagaaaaag |
31652950 |
T |
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| Q |
101 |
aaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgcgcgaat |
200 |
Q |
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| T |
31652951 |
aaatctgaatcatctgttctatggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgcgcgaat |
31653050 |
T |
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| Q |
201 |
acagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagtttgagtga |
300 |
Q |
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| T |
31653051 |
acagacatttgattacaatccatggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagtttgagtga |
31653150 |
T |
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| Q |
301 |
gaagaaactcaaatctgc |
318 |
Q |
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| T |
31653151 |
gaagaaactcaaatctgc |
31653168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 121 - 318
Target Start/End: Original strand, 31703301 - 31703498
Alignment:
| Q |
121 |
atggcagaaagtaaatggtgaagagatggaagatattagtacaagttattacaaatcaaaccagcaaggtgcgcgcgaatacagacatttgattacaatc |
220 |
Q |
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| T |
31703301 |
atggcagagtgtaaatgatgaagacaaggaagatataaatacaaatgctttcaaatcaaaccagcaagttgcacttcaatacaaacatttgattgcaatt |
31703400 |
T |
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| Q |
221 |
catggtggaaaatcagaaggtactatgaaggatagactaaaagttgatggcggtaaagttaaaaggctaagtttgagtgagaagaaactcaaatctgc |
318 |
Q |
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| T |
31703401 |
catggtggaaaatcagaaggtaacatgaaggatatactaaaagttgatggtggtaaagtcagaaggctaagtttgagtgagaagaaactcaaaactgc |
31703498 |
T |
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