View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10776_low_5 (Length: 275)
Name: NF10776_low_5
Description: NF10776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10776_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 31 - 272
Target Start/End: Complemental strand, 2048822 - 2048577
Alignment:
| Q |
31 |
gtgatcatgaacaacatagataggatgccgagtgtcaattcaagagttgaaccactgcaagtttttccaaccttcaccttttgtttatttgagttttcca |
130 |
Q |
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| T |
2048822 |
gtgatcatgaacaacatagataggatgccgagtgtcgattcaagagtcgaaccactgtaagtttttccaacctccaacttttgtttatttgagttttcca |
2048723 |
T |
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| Q |
131 |
caaagcaaatactcaataaaaagag---ggagagttgtaatctaaataaaat-aaaaagatagctagacataactacatgtaaatattcataaaattagg |
226 |
Q |
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| T |
2048722 |
caaagcaaatacccaataaaaagagggaggagagatgcaatctaaataaaataaaaaagatggctagacataactacatgtaaatattcataaaattagg |
2048623 |
T |
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| Q |
227 |
aacgtaatgatacggtgccagtgatctttgcatgtaattattcata |
272 |
Q |
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| T |
2048622 |
aacataatgatatgacgctagtgatctttgcatgtaaatattcata |
2048577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 2054793 - 2054722
Alignment:
| Q |
204 |
atgtaaatattcataaaattaggaacgtaatgatacggtgccagtgatctttgcatgtaattattcatataa |
275 |
Q |
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| T |
2054793 |
atgtaaatattcatataaataagaacatgatgatatggtgcaagtgatctttgcatgtaaatattcatataa |
2054722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2054927 - 2054796
Alignment:
| Q |
1 |
ataattaggagcctaatgcaatttgtgcgcgtgatcatgaacaacatagataggatgccgagtgtcaattcaagagttgaaccactgcaagtttttccaa |
100 |
Q |
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| T |
2054927 |
ataattaagagcctaatgcaactggtacaagtgagcatgaacaatgtagctaggatgccgagcgccatttcaagagttgaaccaccgtaaatgttttcaa |
2054828 |
T |
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| Q |
101 |
ccttcaccttttgtttatttgagttttccaca |
132 |
Q |
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| T |
2054827 |
cctcgaacttcgatttatttgagttttccaca |
2054796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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