View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10776_low_6 (Length: 238)
Name: NF10776_low_6
Description: NF10776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10776_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2048382 - 2048159
Alignment:
| Q |
1 |
cattagaattagaaatcagaagagatcaaaatgattctcaaataccaaggtaattgttttcaactccacaaagcagtaccaagttgaaacaaggcaactt |
100 |
Q |
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| T |
2048382 |
cattagaattaaaaatcagaagagatcaaaatgattcacaaataccaaagtaataattttcaactccacaaagcagtactaagtttagagagggcaactt |
2048283 |
T |
|
| Q |
101 |
aaacattataggccaataactaaataaataccctaggaatgtgttgaatttggagagagtgaaagttatccgctagctccaaagcctcatcacataagtt |
200 |
Q |
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| T |
2048282 |
aaacattatagaccaataactaaataaataccctaggaatgtgttgaatctggagtgagtgaaagttatctgctagctccaaagcctcatcgcataagtt |
2048183 |
T |
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| Q |
201 |
ccttaaacgcgggttgttgatttt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2048182 |
ccttaaacgcgggttgttgatttt |
2048159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 2083258 - 2083207
Alignment:
| Q |
24 |
gatcaaaatgattctcaaataccaaggtaattgttttcaactccacaaagca |
75 |
Q |
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| T |
2083258 |
gatcaaaatgattctcaaataccaatgtaattgttttcaactccacaaagca |
2083207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 2107045 - 2106860
Alignment:
| Q |
24 |
gatcaaaatgattctcaaataccaaggtaattgttttcaactccacaaagcagtaccaagttga-aacaaggcaacttaaacattatag-gccaataact |
121 |
Q |
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| T |
2107045 |
gatcaaaatgatccccaaattccaatctaattgttttcaacttcacaaagcagtgctcaattgagaaagatgcaacttaaacataatagaacaaattgct |
2106946 |
T |
|
| Q |
122 |
aaataaataccctaggaatgtgttgaatttggagagagtgaaagttatccgctagctccaaagcctcatcacataagttccttaaa |
207 |
Q |
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| T |
2106945 |
aaatatataccctaggaatgtaaaagatgctgaacaagtgaaagttatcccttagctccaaagcctcattgcataagttccttaaa |
2106860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 2098451 - 2098402
Alignment:
| Q |
158 |
agtgaaagttatccgctagctccaaagcctcatcacataagttccttaaa |
207 |
Q |
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| T |
2098451 |
agtgaaagttatcccttagctccaaggcctcattgcataagttccttaaa |
2098402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 2054571 - 2054523
Alignment:
| Q |
25 |
atcaaaatgattctcaaataccaaggtaattgttttcaactccacaaag |
73 |
Q |
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| T |
2054571 |
atcaaaatgattctcaaatactaaagcaattgtttgcaaatccacaaag |
2054523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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