View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10776_low_8 (Length: 217)
Name: NF10776_low_8
Description: NF10776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10776_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 1345022 - 1344958
Alignment:
| Q |
135 |
tgaatttaagaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaataga |
199 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1345022 |
tgaatttaaaaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaataga |
1344958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 39266515 - 39266451
Alignment:
| Q |
135 |
tgaatttaagaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaataga |
199 |
Q |
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||||||||| |||||||| |||||||||||||||| | ||||| | ||||||||||||||||||| |
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| T |
39266515 |
tgaatttaacaaattgaattttcaaaatgattatcgacaacataccgaaagatagaaggaataga |
39266451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 33911961 - 33912023
Alignment:
| Q |
135 |
tgaatttaagaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaata |
197 |
Q |
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||||||||| |||||||| |||||||||||||||| | ||||| | |||||||||||||||| |
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| T |
33911961 |
tgaatttaacaaattgaattttcaaaatgattatccacaacataccaaaagatagaaggaata |
33912023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 30951829 - 30951766
Alignment:
| Q |
136 |
gaatttaagaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaataga |
199 |
Q |
| |
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|||||||| |||||||| |||||||||||||||| | ||||| ||||||||||||||||||||| |
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| T |
30951829 |
gaatttaacaaattgaattttcaaaatgattatcgacaacatactgaaagatagaaggaataga |
30951766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 35781451 - 35781496
Alignment:
| Q |
154 |
tttcaaaatgattatcaataacattctgaaagatagaaggaataga |
199 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35781451 |
tttcaaaatgattatcaataacattctggaagatagaaggaataga |
35781496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 23585768 - 23585706
Alignment:
| Q |
135 |
tgaatttaagaaattgaactttcaaaatgattatcaataacattctgaaagatagaaggaata |
197 |
Q |
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|
||||||||| |||||||| |||||||||||||||| | || || ||||||||||||||||||| |
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| T |
23585768 |
tgaatttaacaaattgaattttcaaaatgattatcgacaatatactgaaagatagaaggaata |
23585706 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 4889752 - 4889780
Alignment:
| Q |
135 |
tgaatttaagaaattgaactttcaaaatg |
163 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
4889752 |
tgaatttaagaaattgaactttcaaaatg |
4889780 |
T |
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