View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10778_high_3 (Length: 255)
Name: NF10778_high_3
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_high_3 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2748930 - 2748688
Alignment:
| Q |
1 |
atgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcag |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748930 |
atgctgcttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcag |
2748831 |
T |
|
| Q |
101 |
atgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
2748830 |
atgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccgcatctaggaggattggccctatgcattagccgaag |
2748731 |
T |
|
| Q |
201 |
gtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748730 |
gtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2748688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 5412813 - 5412597
Alignment:
| Q |
27 |
tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaa |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
5412813 |
tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaa |
5412714 |
T |
|
| Q |
127 |
gttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaatgc |
226 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||| | |||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
5412713 |
gttttgatcaagcttgcaatcttgcagactaaagatctgcatccaagaggattgaccctatgcattagccgatggtattcgtcaatgacatcttcaatgc |
5412614 |
T |
|
| Q |
227 |
gaaatgatgcttctctc |
243 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5412613 |
gaaatgatgcttctctc |
5412597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 2797269 - 2797051
Alignment:
| Q |
25 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| || ||| ||| ||||| |
|
|
| T |
2797269 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatca |
2797170 |
T |
|
| Q |
125 |
aagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttcaat |
224 |
Q |
| |
|
| ||||||||| | ||||||||||||| |||||||||||| |||| ||||||| || ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
2797169 |
atgttttgattagacttgcaatcttgcagactaaagatccgcatcccggaggataggccctatgcatcagctgaaggtattcatcaatgacatcttcaat |
2797070 |
T |
|
| Q |
225 |
gcgaaatgatgcttctctc |
243 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2797069 |
gcgaaatgatgcttctctc |
2797051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 2856037 - 2856258
Alignment:
| Q |
22 |
tcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| || ||||| || | |||| |||||| |
|
|
| T |
2856037 |
tcgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaa |
2856136 |
T |
|
| Q |
122 |
tcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatcttc |
221 |
Q |
| |
|
|||||||||||||| | |||| || |||| |||||||||||||| || | ||||||||| |||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
2856137 |
tcaaagttttgattcggcttgtaaccttgttgactaaagatccacgtccatgaggattggccctatgtatcaaccgaaggtattcatcaatgacatcttc |
2856236 |
T |
|
| Q |
222 |
aatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2856237 |
aatgcgaaatgatgcttctctc |
2856258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 2769000 - 2768759
Alignment:
| Q |
2 |
tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcaga |
101 |
Q |
| |
|
||||| |||| | |||| |||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||||| || | |
|
|
| T |
2769000 |
tgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaa |
2768901 |
T |
|
| Q |
102 |
tgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaagg |
201 |
Q |
| |
|
||| || | |||||||||| |||||||||||||| | |||||||||||| || ||||||||| | ||| ||| |||||| |||||| | | ||||||| |
|
|
| T |
2768900 |
tgcaattttatgacggggagtcaaagttttgattaggcttgcaatcttgaagattaaagatccgcgtctgggacgattggccctatgggtcaaccgaagg |
2768801 |
T |
|
| Q |
202 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2768800 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2768759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 2790275 - 2790048
Alignment:
| Q |
25 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatca |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||||| ||||||||| |
|
|
| T |
2790275 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatca |
2790176 |
T |
|
| Q |
125 |
aagttttgatttgccttgcaatcttgccgactaaagat---ccacatctaggaggattg------gtcctatgcattagccgaaggtattcatcaatgac |
215 |
Q |
| |
|
||||||||||| | ||||||||||||| || ||||||| | |||| || ||||||| | ||||||||| ||||||||||||||||| |||| |
|
|
| T |
2790175 |
aagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgat |
2790076 |
T |
|
| Q |
216 |
atcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2790075 |
atcttcaatgcgaaatgatgcttctctc |
2790048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 2838810 - 2839048
Alignment:
| Q |
2 |
tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcaga |
101 |
Q |
| |
|
|||||||||| | |||| |||| | |||||||||||||||||||||||| ||||||| ||||||||| || ||| | || ||||| ||||| || || |
|
|
| T |
2838810 |
tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctga |
2838909 |
T |
|
| Q |
102 |
tgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaagg |
201 |
Q |
| |
|
||| || | |||||||||||||||||||||||| ||||| | || ||| |||||||| |||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
2838910 |
tgcaattttgtgacggggaatcaaagttttgattaaccttggagtcatgca---taaagatctgcatccaggaggattggccctatgcattagtcgaagg |
2839006 |
T |
|
| Q |
202 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2839007 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2839048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 2818475 - 2818247
Alignment:
| Q |
15 |
tcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatga |
114 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| || ||||| || | || | |
|
|
| T |
2818475 |
tccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaatttcataa |
2818376 |
T |
|
| Q |
115 |
cggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatga |
214 |
Q |
| |
|
|||||| ||||||| || ||| |||| |||||||| || ||||||| |||| |||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
2818375 |
cggggagtcaaagtcttcattaatcttggaatcttgcataccaaagatctgcatcctggagaattggtcctatggatcaaaagaaggtattcatcaatga |
2818276 |
T |
|
| Q |
215 |
catcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
2818275 |
catcttcaatgcgaaatgatgcatctctc |
2818247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 2759145 - 2758904
Alignment:
| Q |
2 |
tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcaga |
101 |
Q |
| |
|
||||| |||| | |||| |||| | |||||||||||||||||||||| | ||||||||||||||||| |||||| | || ||||| ||||| || || |
|
|
| T |
2759145 |
tgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctga |
2759046 |
T |
|
| Q |
102 |
tgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaagg |
201 |
Q |
| |
|
||| || | |||||||||||||||||||||||| | |||| ||||||| || || |||||| | | ||||||||||| | |||| || ||||||||| |
|
|
| T |
2759045 |
tgcaattttgtgacggggaatcaaagttttgattgggcttgtaatcttgttgaatacagatccgctaccaggaggattggccgtatggatcagccgaagg |
2758946 |
T |
|
| Q |
202 |
tattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
||||| ||||| | ||||||||||||||| |||||||||||| |
|
|
| T |
2758945 |
tattcgtcaattatatcttcaatgcgaaacgatgcttctctc |
2758904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 2807197 - 2806955
Alignment:
| Q |
6 |
gcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgct |
105 |
Q |
| |
|
|||||| | |||| |||| ||||||||||| |||||||||||||||||||||||||||||||| |||| || | |||||||| | || | ||||||| |
|
|
| T |
2807197 |
gcttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgct |
2807098 |
T |
|
| Q |
106 |
atatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatcca---catctaggagga------ttggtcctatgcattagcc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| || | |||||||| |||| ||||||| || | | ||||||| |||| |
|
|
| T |
2807097 |
atatgatgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagcc |
2806998 |
T |
|
| Q |
197 |
gaaggtattcatcaatgacatcttcaatgcgaaatgatgcttc |
239 |
Q |
| |
|
|| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
2806997 |
gatggtattcatcgatgatatcttcaatgcgaaatgatgcttc |
2806955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 2755782 - 2755734
Alignment:
| Q |
195 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755782 |
ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctc |
2755734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 6377 - 6596
Alignment:
| Q |
20 |
gttcgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacgggg |
119 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||| ||||||||||| ||||| | | |
|
|
| T |
6377 |
gttcatgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgaga |
6476 |
T |
|
| Q |
120 |
aatcaaagttttgatttgccttgcaatcttgccgactaaagatccacatctaggaggattggtcctatgcattagccgaaggtattcatcaatgacatct |
219 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||| |||||| ||||| |||| |||||| |||| |||||| || |||||||||||||||||||| |||||| |
|
|
| T |
6477 |
aatcaaagttttgattaggcttacaatcttgcagactaatgatccgcatccaggagggttggccctatggatcagccgaaggtattcatcaataacatct |
6576 |
T |
|
| Q |
220 |
tcaatgcgaaatgatgcttc |
239 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6577 |
tcaatgcgaaatgatgcttc |
6596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University