View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10778_low_1 (Length: 397)
Name: NF10778_low_1
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 34908184 - 34908569
Alignment:
| Q |
1 |
atgctactaataagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaagcttattaatttatatgttactcatggtga |
100 |
Q |
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| T |
34908184 |
atgctactaagaagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaagcttattaatttatatgtcactcatggtga |
34908283 |
T |
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| Q |
101 |
tatttcattatctcgttccacatttgattatattcacaaaaagaatatcttttcatggaattcaattatatctgcttatgttcgatttggaaaataccat |
200 |
Q |
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| T |
34908284 |
tatttcattatctcgttccacatttgattatattcacaaaaagaatatcttttcatggaattcaattatatctgcttatgttcgatttggaaaataccat |
34908383 |
T |
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| Q |
201 |
gaagctatgaattgtgtcaatcaattgttttcaatgtgtggtggtggtcatttacgacctgatttttatacttttcctcctatattgaaagcttgtgtaa |
300 |
Q |
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| T |
34908384 |
gaagctatgaattgtgtcaatcaattgttttcaatgtgtggtggtggtcatttacgacctgatttttatacttttcctcctatattgaaagcttgtgtaa |
34908483 |
T |
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| Q |
301 |
gtcttgttgatgggaagaaagtgcattgttgtgtttttaagatgggttttgaggatgatgtatttgttgctgcttctttggttcat |
386 |
Q |
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| T |
34908484 |
gtcttgttgatgggaagaaagtgcattgttgtgtttttaagatgggttttgaggatgatgtatttgttgctgcttctttggttcat |
34908569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 1815820 - 1815919
Alignment:
| Q |
11 |
taagcttcatgctcttcttctggtatttggaaaatctcaaaacattgttttatcaacaaagcttattaatttatatgttactcatggtgatatttcatta |
110 |
Q |
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| T |
1815820 |
taagcttcatgctcttcttgtggtgttgggaaaatcccaaaacgttgttctatctacagagcttagtaatatgtatgtcactcttggatatatctcatta |
1815919 |
T |
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