View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10778_low_10 (Length: 227)
Name: NF10778_low_10
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_10 |
 | |
|
| [»] scaffold1268 (1 HSPs) |
| | |
|
| [»] scaffold1267 (1 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1268 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 374 - 181
Alignment:
| Q |
16 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
374 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctg |
275 |
T |
|
| Q |
116 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatg |
181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 374 - 181
Alignment:
| Q |
16 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
374 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctg |
275 |
T |
|
| Q |
116 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
274 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatg |
181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 35868816 - 35869009
Alignment:
| Q |
16 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35868816 |
agagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctg |
35868915 |
T |
|
| Q |
116 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35868916 |
tccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatg |
35869009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 35854229 - 35854400
Alignment:
| Q |
38 |
tacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaat |
137 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||| |||||| ||||||| |||| |||| ||| |
|
|
| T |
35854229 |
tacctttgaatggaagaattcctcttttaacaagctcatcatattgcaaatatccgacaaagccacaagcagaagcagtccaaaactgtagctctttaat |
35854328 |
T |
|
| Q |
138 |
gcccaaatctttagccactcttccagcgaa-gtcataattaccatcagcaattatgcaagtaactggaatatg |
209 |
Q |
| |
|
||| ||||| ||||||||||||||||| || ||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
35854329 |
gcctaaatccttagccactcttccagcaaatcccatta-tgccatcagcaattatgcaagtaactggaatatg |
35854400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 217
Target Start/End: Original strand, 35759489 - 35759668
Alignment:
| Q |
38 |
tacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaat |
137 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| || || | ||||||||| ||||||| ||||||| |||||| ||||||| ||||| ||| |||| |
|
|
| T |
35759489 |
taccttggaatggaagaatgcctcttttgacaagttcatcataatgcaaatatcccacaaacccacaagcagaagcagtccaaaactgtatttcttgaat |
35759588 |
T |
|
| Q |
138 |
gcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgtgatgatg |
217 |
Q |
| |
|
|||||||||| | || ||||||||||| || || || |||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
35759589 |
gcccaaatctcttgctactcttccagcaaaaccaaaaagaccatcagcaataatgcaagtaactggaatatgtggtgatg |
35759668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 211
Target Start/End: Original strand, 35775913 - 35776087
Alignment:
| Q |
37 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaa |
136 |
Q |
| |
|
||||||||||| |||| |||||| || | |||||||| ||| | || |||||| ||| | |||||||| |||||| ||||||| || ||| ||| |
|
|
| T |
35775913 |
ttacctttgaagggaataattcccctctcaacaagctcatcgtactgtaaatatcccaacatgccacaagcagaagcagtccaaaacactagttcttgaa |
35776012 |
T |
|
| Q |
137 |
tgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgtg |
211 |
Q |
| |
|
| |||||||| || |||||| ||||||| ||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
35776013 |
tccccaaatcctttgccacttttccagcaaagcccgaaaatccatcagcaattatgcaagtaactggaatatgtg |
35776087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 35737686 - 35737772
Alignment:
| Q |
60 |
tcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaatgcccaaatc |
146 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||| || ||||||| |||||| ||||||| |||| |||| |||||||||||| |
|
|
| T |
35737686 |
tcttttgataagctcatcaaattgcaaatatcccatcaacccacaagcagaagcagtccaaaattgttgctctgcaatgcccaaatc |
35737772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 383 - 215
Alignment:
| Q |
37 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaa |
136 |
Q |
| |
|
||||||||||| |||| |||||| || || |||||||| ||| |||| |||||| ||| |||||| ||| ||||| ||||||| || |||| ||| |
|
|
| T |
383 |
ttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagctcttgaa |
284 |
T |
|
| Q |
137 |
tgcccaaatctttagccactcttccagcgaag-tcataattaccatcagcaattatgcaagtaactggaa |
205 |
Q |
| |
|
| ||||||||||| || ||||||||||| ||| || |||| ||||| |||||||||||||||||||||| |
|
|
| T |
283 |
tccccaaatcttttgctactcttccagcaaagctcgaaatt-ccatcggcaattatgcaagtaactggaa |
215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University