View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10778_low_11 (Length: 226)
Name: NF10778_low_11
Description: NF10778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10778_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 4750785 - 4750588
Alignment:
| Q |
17 |
acatcatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatg |
116 |
Q |
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| T |
4750785 |
acataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccaaagttgggggcggaagggaggccgctttgagatgtttataaaaatg |
4750686 |
T |
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| Q |
117 |
gataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttg |
214 |
Q |
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| T |
4750685 |
ggtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttccctttg |
4750588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 4750991 - 4750794
Alignment:
| Q |
17 |
acatcatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatg |
116 |
Q |
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| T |
4750991 |
acataatgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatg |
4750892 |
T |
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| Q |
117 |
gataagggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgtttatgtaaagcatctttccctttg |
214 |
Q |
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| T |
4750891 |
ggtaagggtaggggtaggatgtagaatcacatgttaatgcctcatttgataaaactgccaaacaagttgcatgtttatgtaaagcatctttcgctttg |
4750794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 51322743 - 51322911
Alignment:
| Q |
22 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggtggaagggaggccgctttgagatgtttataaaaatggataa |
121 |
Q |
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| T |
51322743 |
atgagaggtttggtttctttctctttgtttggatgtttaaaatccaccagagttgggggcggaagggaggccgctttgagatgtttataaaaatggataa |
51322842 |
T |
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| Q |
122 |
gggtaggggtaggatgtagaatcacatgttaatgcctcgtttgataaaactgccaaacaagttgcgtgt |
190 |
Q |
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| T |
51322843 |
gggtaggggtaggatgtagaatcacatcttaatgccacatttgataaaactgccaaacaagttgcgtgt |
51322911 |
T |
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